| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,161,180 – 22,161,282 |
| Length | 102 |
| Max. P | 0.511306 |
| Location | 22,161,180 – 22,161,282 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.81 |
| Mean single sequence MFE | -30.74 |
| Consensus MFE | -19.38 |
| Energy contribution | -18.80 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22161180 102 - 27905053 -CUCCUGC----UUUCGGCCAAGAACAAUGGCGCGGAUGUAAUGUUCGCAUUAUGCUCGUUCACAAAUUGUAAGCAGCCAUUAUGUUUCUUCGUGUUGC----CCAUGUUU--------- -.......----...(((((((((((((((((((((((.....))))))....((((..(.........)..)))))))))..)).))))).).)))).----........--------- ( -22.70) >DroVir_CAF1 25657 108 - 1 -AUGGGGUUUUGUGGGGGCAAGAAACAAUGGCGCAGAUGUAAUGUUCGCAUUAUGCUCGUUCACAAAUUGUAAGCAGCCAUUAUGUUUCUUCAUGUUGCUGCCCCAUGU----------- -(((((((...(..(.(..(((((((((((((((((((((.......))))).)))..(((.((.....)).))).)))))..))))))))..).)..).)))))))..----------- ( -37.50) >DroGri_CAF1 24072 104 - 1 -GUAGG------CUGGGGCAAGAAACAAUGGCGCGGAUGUAAUGUUCGCAUUAUGCUCGUUCACAAAUUGUAAGCAGCCAUUAUGUUUCUUCGUGUUGCUGCCCCAUGUUG--------- -...((------((((((((((((((((((((((((((.....))))))....((((..(.........)..)))))))))..))))))).........))))))).))).--------- ( -37.30) >DroWil_CAF1 4156 111 - 1 -CUCCCUC----UGCCACCAAAGAACAAUGGCGCGGAUGUAAUGUUCGCAUUAUGCUCGUUCACAAAUUGUAAGCAGCCAUUAUGUUUCUUCAUGUUGC----CCAUGUUGCUUUCUCCU -.......----.((.((..((((((((((((((((((.....))))))....((((..(.........)..)))))))))..)).)))))...)).))----................. ( -22.30) >DroMoj_CAF1 25241 103 - 1 -GUGGGGC----AGGGGGCAAGAAACAAUGGCGCGGAUGUAAUGUUCGCAUUAUGCUCGUUCACAAAUUGUAAGCAGCCAUUAUGUUUCUUCAUGUUC--GCUCUGUGU-G--------- -.....((----(.((((((((((((((((((((((((.....))))))....((((..(.........)..)))))))))..)))))))).......--))))).)))-.--------- ( -34.31) >DroPer_CAF1 25759 103 - 1 GCGGCUGC----UGCUGGCCAAGAACAAUGGCGCGGAUGUAAUGUUCGCAUUAUGCUCGUUCACAAAUUGUAAGCAGCCAUUAUGUUUCUUCAUGUUGC----CCAUGUUU--------- ((((((((----(((..((((.......))))(((..(((((((....)))))))..))).........)).)))))))..((((......))))..))----........--------- ( -30.30) >consensus _CUGCGGC____UGGGGGCAAAAAACAAUGGCGCGGAUGUAAUGUUCGCAUUAUGCUCGUUCACAAAUUGUAAGCAGCCAUUAUGUUUCUUCAUGUUGC____CCAUGUUG_________ ......................((((((((((((((((.....))))))....((((..(.........)..)))))))))..)))))...((((.........))))............ (-19.38 = -18.80 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:21 2006