| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,160,431 – 22,160,528 |
| Length | 97 |
| Max. P | 0.577922 |
| Location | 22,160,431 – 22,160,528 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 82.59 |
| Mean single sequence MFE | -27.42 |
| Consensus MFE | -17.75 |
| Energy contribution | -17.42 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.577922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22160431 97 - 27905053 AGGCAAAAACGGCAUUGACCACAAGACAAGACACAAGAUGUCCAUCUGACUGGGCCAAG--AAAACCUUCGACCUGUGGUCAAGAGCAACAAGUUUGCA ..(((((....((.((((((((.(((...((((.....))))..)))....((((.(((--.....))).).)))))))))))..))......))))). ( -27.30) >DroSec_CAF1 4782 97 - 1 AGGCAAAAACGGCGAUGACCGCUGGACAAGACACAAGAUGACCGUCUGUCUGGGCCAAG--AAAACCUUCGACCUGUGGUCAAGAGCAACAAGUUUGCA ..(((((....((..(((((((.(((((.(((...........))))))))((((.(((--.....))).).))))))))))...))......))))). ( -29.20) >DroSim_CAF1 3261 97 - 1 AGGCAAAAACGGCGAUGACCGCUGGACAAGACACAAGAUGUCCGUCUGUCUGGGCCAAG--AAAACCUUCGACCUGUGGUCAAGAGCAACAAGUUUGCA ..(((((....((..(((((((.(((((.(((((.....))..))))))))((((.(((--.....))).).))))))))))...))......))))). ( -29.40) >DroEre_CAF1 15932 97 - 1 AGGCAGAAACGGCGAUGACCACAAGACAAGACACAAGAUGUCCGUCUGUUCGGGCCAAG--AAAACCUUCGACCUGUGGUCAAGAGCAACAAGUUUGCU .((((((....((..(((((((.((((..((((.....)))).))))....((((.(((--.....))).).))))))))))...))......)))))) ( -29.60) >DroYak_CAF1 10501 97 - 1 AGGCAGAAACGGCGAUGACCACAAGACAAGACACAAGAUGUCCUUCUGUUCGGGCCAAG--AAAACCUUCGACCUGUGGUCAAGAGCAACAAGUUUGCA ..(((((....((..(((((((.(((...((((.....))))..)))....((((.(((--.....))).).))))))))))...))......))))). ( -26.50) >DroPer_CAF1 25050 91 - 1 AGGCCCAAAUGGUGAUGACCACAAGACAG------AUUUGGCAAUCCGUUAAAGCAGAGGCACAAUCUACACUUUGCGGUCAAGAGCAACAAGUG--GA ....(((..((.((.(((((....(((.(------(((....)))).)))...((((((............)))))))))))....)).))..))--). ( -22.50) >consensus AGGCAAAAACGGCGAUGACCACAAGACAAGACACAAGAUGUCCGUCUGUCUGGGCCAAG__AAAACCUUCGACCUGUGGUCAAGAGCAACAAGUUUGCA ..(((((....((..(((((((..(((.(((.............)))))).((((.(((.......))).).))))))))))...))......))))). (-17.75 = -17.42 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:20 2006