Locus 8300

Sequence ID 3R_DroMel_CAF1
Location 22,155,337 – 22,155,457
Length 120
Max. P 0.812686
window13386

overview

Window 6

Location 22,155,337 – 22,155,457
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 99.44
Mean single sequence MFE -33.17
Consensus MFE -33.32
Energy contribution -33.10
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.73
Structure conservation index 1.00
SVM decision value 0.65
SVM RNA-class probability 0.812686
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22155337 120 - 27905053
GCUGAUUAUAACUGCAAGUGGAUUCACUCCGGGAGCCACAGCUGCGGAACUUAUUGCUCAUCCGCCCUGUGGUUCGGUCAACCGCUCACAGACUUCAAUGUUAAUUAACUUGUUUUUAAU
........(((..((((((.((((.((.....(((((((((..(((((............))))).)))))))))((....))................)).)))).))))))..))).. ( -33.20)
>DroSec_CAF1 85812 120 - 1
GCUGAUUAUAACUGCAAGUGGAUUCACUCCGGGAGCCACAGCUGCGGAACUUAUUGCUCAUCCGCCCUGUGGUUCAGUCAACCGCUCACAGACUUCAAUGUUAAUUAACUUGUUUUUAAU
........(((..((((((.((((.((.....(((((((((..(((((............))))).)))))))))((((...........)))).....)).)))).))))))..))).. ( -33.10)
>DroSim_CAF1 80282 120 - 1
GCUGAUUAUAACUGCAAGUGGAUUCACUCCGGGAGCCACAGCUGCGGAACUUAUUGCUCAUCCGCCCUGUGGUUCGGUCAACCGCUCACAGACUUCAAUGUUAAUUAACUUGUUUUUAAU
........(((..((((((.((((.((.....(((((((((..(((((............))))).)))))))))((....))................)).)))).))))))..))).. ( -33.20)
>consensus
GCUGAUUAUAACUGCAAGUGGAUUCACUCCGGGAGCCACAGCUGCGGAACUUAUUGCUCAUCCGCCCUGUGGUUCGGUCAACCGCUCACAGACUUCAAUGUUAAUUAACUUGUUUUUAAU
........(((..((((((.((((.((.....(((((((((..(((((............))))).)))))))))((((...........)))).....)).)))).))))))..))).. (-33.32 = -33.10 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:19 2006