Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,855,001 – 2,855,092 |
Length | 91 |
Max. P | 0.729467 |
Location | 2,855,001 – 2,855,092 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 88.34 |
Mean single sequence MFE | -24.97 |
Consensus MFE | -22.12 |
Energy contribution | -23.07 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.12 |
Mean z-score | -1.55 |
Structure conservation index | 0.89 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2855001 91 - 27905053 GUGCAUUUCGUCUGCGUCGUUUGGCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGUUUGAGUGUGCGGUUGCACAC (((((.......(((((.....(((.......)))((........)).)))))...(((((((((........))))).)))).))))).. ( -28.70) >DroSec_CAF1 130066 91 - 1 GUGCAUUUGGUCUGCGUCCUUUGGCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGAGUGAGUGUGCGGUUGCACAC (((((.......(((((.....(((.......)))((........)).)))))...(((((((((........))))).)))).))))).. ( -28.70) >DroSim_CAF1 134896 91 - 1 GUGCAUUUUGUCUGCGUCCUUUGUCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGAGUGACUGUGCGGUUGCACAC (((((......(((((..........((..((((.((........))...))))...)).(((((....)))))....))))).))))).. ( -19.40) >DroEre_CAF1 132734 90 - 1 GUGCAUUUUGUCUGCGUCCUUUGGCUCGUU-UGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGACUGAGUGUGCGGUUGCACAC (((((.......(((((.....(((.....-.)))((........)).)))))...(((((((((........))))).)))).))))).. ( -29.20) >DroYak_CAF1 142975 90 - 1 GUGCAUUUUGUCUGCGUCCUUUGGCUCGUU-UGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGAGUGAGUGUGCGGUUGCACAC (((((.......(((((.....(((.....-.)))((........)).)))))...(((((((((........))))).)))).))))).. ( -29.20) >DroAna_CAF1 122107 78 - 1 GU-------------GUCCUUUGGCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUUACCAUUCUUCCCAGCGAGUGUGUGGUCAGCUAC ((-------------((.....(((.......)))((........)).))))....(((((((((........))))).))))........ ( -14.60) >consensus GUGCAUUUUGUCUGCGUCCUUUGGCUCGUUUUGCCGGUAAAUUUUCCAACGCAAUUUCGCCAUUCUUCCGAGUGAGUGUGCGGUUGCACAC (((((.......(((((.....(((.......)))((........)).)))))...(((((((((........))))).)))).))))).. (-22.12 = -23.07 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:08 2006