Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 511,619 – 511,750 |
Length | 131 |
Max. P | 0.910471 |
Location | 511,619 – 511,719 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 84.41 |
Mean single sequence MFE | -19.00 |
Consensus MFE | -13.16 |
Energy contribution | -13.50 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.08 |
Mean z-score | -1.82 |
Structure conservation index | 0.69 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 511619 100 + 27905053 ACUUUAUAUGGUAUCAAACGUCUCAUUUACUGCUAUAAGCUACAAGCUUCUGUCGGAAAUCCAUAAACCCUGAGCAAGGGUAUAACAAGAACUAUAGAUC ......((((((.((..............(((.((.((((.....)))).)).)))..........(((((.....))))).......)))))))).... ( -18.10) >DroSec_CAF1 38314 95 + 1 ACUUUAUAUGGUCUCAAACUUCUCAUUUACACC-----GCUACAAGCUUCUGGCAAAAAUCCAUAUACUCUAAGCAAGGGUAUAACAAGAACUAGAGAUC .........((((((....((((..........-----((((........)))).........((((((((.....))))))))...))))...)))))) ( -17.30) >DroSim_CAF1 38345 88 + 1 -------AUGGUCUCAAACGUCUCAUUUACACC-----GCUACAAGCUUCUGGCAGAAAUCCAUAUACCCUGAGCAAGGGUAUAACAAGAACUAGAGAUC -------..((((((..................-----((.....))((((((.(....))).((((((((.....))))))))...))))...)))))) ( -21.60) >consensus ACUUUAUAUGGUCUCAAACGUCUCAUUUACACC_____GCUACAAGCUUCUGGCAGAAAUCCAUAUACCCUGAGCAAGGGUAUAACAAGAACUAGAGAUC .........((((((.....(((.((((...((.....((.....))....))...))))...((((((((.....))))))))...)))....)))))) (-13.16 = -13.50 + 0.34)
Location | 511,659 – 511,750 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 81.83 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -12.52 |
Energy contribution | -14.40 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.10 |
Mean z-score | -2.16 |
Structure conservation index | 0.68 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 511659 91 + 27905053 UACAAGCUUCUGUCGGAAAUCCAUAAACCCUGAGCAAGGGUAUAACAAGAACUAUAGAUCAAUAACUGCACAAAAGUAGUUUAGAGUAAAA-- (((.....(((((.((....))....(((((.....)))))............)))))((...((((((......))))))..)))))...-- ( -18.00) >DroSec_CAF1 38349 93 + 1 UACAAGCUUCUGGCAAAAAUCCAUAUACUCUAAGCAAGGGUAUAACAAGAACUAGAGAUCAACAACUGCACAAAAGUAGUUUAGAGGAAAAUU ......((((((...........((((((((.....))))))))...................((((((......))))))))))))...... ( -17.20) >DroSim_CAF1 38373 93 + 1 UACAAGCUUCUGGCAGAAAUCCAUAUACCCUGAGCAAGGGUAUAACAAGAACUAGAGAUCAACAACUGCACAAAAGUAGUUUAGAGGAAAAUU ......((((((...........((((((((.....))))))))...................((((((......))))))))))))...... ( -21.10) >DroEre_CAF1 42485 86 + 1 UACAAACUUCUGACUGAAUUCUAUAUACCCUGAGCAAGGGUAUUAGAAGUACUAGAU----ACAAUGGCACAAAAGUAGUUUUCCUCUAC--- ...(((((.((.......(((((.(((((((.....))))))))))))((.(((...----....))).))...)).)))))........--- ( -17.70) >consensus UACAAGCUUCUGGCAGAAAUCCAUAUACCCUGAGCAAGGGUAUAACAAGAACUAGAGAUCAACAACUGCACAAAAGUAGUUUAGAGGAAAA__ ......((((((...........((((((((.....))))))))...................((((((......))))))))))))...... (-12.52 = -14.40 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:37 2006