Locus 8298

Sequence ID 3R_DroMel_CAF1
Location 22,153,609 – 22,153,729
Length 120
Max. P 0.620267
window13383

overview

Window 3

Location 22,153,609 – 22,153,729
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.83
Mean single sequence MFE -39.33
Consensus MFE -27.64
Energy contribution -28.42
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.84
Structure conservation index 0.70
SVM decision value 0.18
SVM RNA-class probability 0.620267
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22153609 120 + 27905053
UUUGCUUAUAUGUAUAUAUAUGUGUAUGCAAAUGACAGUGCGGCGAUCUGGGGCCUGUCAUUGACCCAUUUCCGGAUGGCCUCAAACUCGUGGCAAAGCCUCGAAAACAGUUAAUGUGCU
(((((.((((((((....)))))))).)))))....((..((((.((((((((...(((...)))....)))))))).)))......(((.(((...))).)))...........)..)) ( -35.90)
>DroSec_CAF1 84074 109 + 1
UUUGCAUA------UAUAUGUGUGUAUGCAAAUGACAGUGCGGCGAUCUGGGGCCUGUCAUUGACCCAUUUCCGGAUGGCCUCAAACUCGUGGCAAAGC-----ACACAGUUAAUGUGCU
((((((((------(((....)))))))))))......(((.((((..(((((((.(((...((......))..))))))))))...)))).))).(((-----(((.......)))))) ( -40.20)
>DroSim_CAF1 78539 109 + 1
UUUGCAUA------UAUAUGUGUGCAUGCAAAUGACAGUGUGGCGAUCUGGGGCCUGUCAUUGACCCAUUUCCGGAUGGCCUCAAACUCGUGGCAAAGC-----ACACAGUUAAUGUGCU
...(((((------(...(((((((.(((..((((...((.(((.((((((((...(((...)))....)))))))).))).))...)))).)))..))-----)))))....)))))). ( -41.90)
>consensus
UUUGCAUA______UAUAUGUGUGUAUGCAAAUGACAGUGCGGCGAUCUGGGGCCUGUCAUUGACCCAUUUCCGGAUGGCCUCAAACUCGUGGCAAAGC_____ACACAGUUAAUGUGCU
((((((((................))))))))......(((.((((..(((((((.(((...((......))..))))))))))...)))).)))..........((((.....)))).. (-27.64 = -28.42 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:15 2006