| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,150,710 – 22,150,830 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 22,150,710 – 22,150,830 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.89 |
| Mean single sequence MFE | -34.36 |
| Consensus MFE | -34.19 |
| Energy contribution | -33.97 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.32 |
| Structure conservation index | 1.00 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22150710 120 - 27905053 AUGCGAAUGUGAUUUCUAUUUAUGAGCACACAAGUUGUGUGUCUGGGUUCAUAAAUUUUCCAGCUUCCAAUUGAAUCGCAUGUGCGCAAUGUCCGGGAAAUUGGCUAAGGUCAGUUACGG .((((.(((((((((..........((((((.....))))))(((((...........))))).........)))))))))...))))....(((...(((((((....))))))).))) ( -35.20) >DroSec_CAF1 81142 120 - 1 AUGCGAAUGUGAUUUCUAUUUAUGAGCACACGAGUUGUGUGUCUGGGUUCAUAAAUUUUCUAGCUUCCAAUUGAAUCGCAUGUGCGCAAUGUCCGGGAAAUUGGCUAAGGUCAGUUACGG .((((.(((((((((..(((((((((((((((.....)))))....))))))))))................)))))))))...))))....(((...(((((((....))))))).))) ( -33.37) >DroSim_CAF1 75611 120 - 1 AUGCGAAUGUGAUUUCUAUUUAUGAGCACACGAGUUGUGUGUCUGGGUUCAUAAAUUUUCCAGCUUCCAAUUGAAUCGCAUGUGCGCAAUGUCCGGGAAAUUGGCUAAGGUCAGUUACGG .((((.(((((((((..........((((((.....))))))(((((...........))))).........)))))))))...))))....(((...(((((((....))))))).))) ( -34.50) >consensus AUGCGAAUGUGAUUUCUAUUUAUGAGCACACGAGUUGUGUGUCUGGGUUCAUAAAUUUUCCAGCUUCCAAUUGAAUCGCAUGUGCGCAAUGUCCGGGAAAUUGGCUAAGGUCAGUUACGG .((((.(((((((((..........((((((.....))))))(((((...........))))).........)))))))))...))))....(((...(((((((....))))))).))) (-34.19 = -33.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:11 2006