Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,150,510 – 22,150,630 |
Length | 120 |
Max. P | 0.717091 |
Location | 22,150,510 – 22,150,630 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -20.20 |
Consensus MFE | -19.42 |
Energy contribution | -19.20 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.74 |
Structure conservation index | 0.96 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22150510 120 - 27905053 UUUUCACACAUUCCCAGUAGUUUUUGCCACACCCGCACCAUUGAACCCUCAAACACGUUGAAAUAUUUAUGUCUUUGCAUAUUUCACCGACACAUUUGCACUUGACAAUAACAACAGGGA ...........((((.((.(((.(((.((.....(((...((((....))))...((.((((((((.((......)).)))))))).)).......)))...)).))).))).)).)))) ( -20.70) >DroSec_CAF1 80942 120 - 1 UUUUCACACAUUCCCAGUAGUUUUUGCCACACCCGCACCAUUGAACCCUCAAACACGUUGAAAUAUUUAUGUCUUUGCAUAUUUCACCGACACAUUUGCACUUGACAAUAACAACAGGGA ...........((((.((.(((.(((.((.....(((...((((....))))...((.((((((((.((......)).)))))))).)).......)))...)).))).))).)).)))) ( -20.70) >DroSim_CAF1 75411 120 - 1 UUUUCACACAUUCCCAGUAGUUUUUGCCACACCCGCACCAUUGAACCCUCAAACACGUUGAAAUAUUUAUGUCUUUGCAUAUUUCACCGACACAUUUCCACUUGACAAUAGCAACAGGGA ...........((((.((.(((.(((.((...........((((....))))...((.((((((((.((......)).)))))))).)).............)).))).))).)).)))) ( -19.20) >consensus UUUUCACACAUUCCCAGUAGUUUUUGCCACACCCGCACCAUUGAACCCUCAAACACGUUGAAAUAUUUAUGUCUUUGCAUAUUUCACCGACACAUUUGCACUUGACAAUAACAACAGGGA ...........((((.((.(((.(((.((...........((((....))))...((.((((((((.((......)).)))))))).)).............)).))).))).)).)))) (-19.42 = -19.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:10 2006