Locus 8290

Sequence ID 3R_DroMel_CAF1
Location 22,149,141 – 22,149,261
Length 120
Max. P 0.567032
window13367

overview

Window 7

Location 22,149,141 – 22,149,261
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -23.98
Consensus MFE -21.20
Energy contribution -20.82
Covariance contribution -0.38
Combinations/Pair 1.06
Mean z-score -1.64
Structure conservation index 0.88
SVM decision value 0.07
SVM RNA-class probability 0.567032
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22149141 120 + 27905053
AUGUGCAUAAAAAUGCACUCAAAUAAAUUUGUAUUUUCAUUUUUAUGGUAAAACAAAAUGGCUUUUGACUCGUGCAUUUCAUGUGCAUUUGAAGCUCGUUUUGCUGCCCUUUAUUUAUAU
..((((((....))))))....(((((..((......))..)))))((((...((((((((((((......((((((.....))))))..))))).))))))).))))............ ( -28.90)
>DroSec_CAF1 79593 119 + 1
-UGUGUAUAAAAAUGCAAUCAUAUAGAUUUGUAUUUUCAUUUUUAUGGUAAAACAAAAUGGCUUUUGACUUGUGCAUUUCAUGUGCAUUUGACGCUCGUUUUGCUGCCCUUUAUUUAUAU
-...((((((((((((((((.....)).)))))))...........((((...(((((((((.((......((((((.....))))))..)).)).))))))).)))).....))))))) ( -22.80)
>DroSim_CAF1 74067 120 + 1
AUGUGUAUAAAAAUGCAAUCAUAUAAAUUUGUAUUUUCAUUUUUAUGGUAAAACAAAAUGGCUUUUGACUUGUGCAUUUCAUGUGCAUUUGACGCUCGUUUUGCUGCCCUUUAUUUAUAU
......(((((((((.((..(((......)))..)).)))))))))((((...(((((((((.((......((((((.....))))))..)).)).))))))).))))............ ( -22.00)
>DroYak_CAF1 72506 120 + 1
UUGUGUAUAAAAAUGCAAUCAAAUAAAUUUGUAUUUUCAUUUUUAUGGUAAAACAAAAUGGCUUUUGACUUGUGCAUUUCAUGUGCAUUUGACGCUCGUUUUGCUGCCCUUUAUUUAUUU
......(((((((((.((.((((....))))...)).)))))))))((((...(((((((((.((......((((((.....))))))..)).)).))))))).))))............ ( -22.20)
>consensus
AUGUGUAUAAAAAUGCAAUCAAAUAAAUUUGUAUUUUCAUUUUUAUGGUAAAACAAAAUGGCUUUUGACUUGUGCAUUUCAUGUGCAUUUGACGCUCGUUUUGCUGCCCUUUAUUUAUAU
...(((((....))))).....(((((..((......))..)))))((((...(((((((((.((......((((((.....))))))..)).)).))))))).))))............ (-21.20 = -20.82 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:00 2006