Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,853,171 – 2,853,285 |
Length | 114 |
Max. P | 0.917402 |
Location | 2,853,171 – 2,853,285 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.37 |
Mean single sequence MFE | -22.51 |
Consensus MFE | -14.82 |
Energy contribution | -15.10 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.42 |
Mean z-score | -2.15 |
Structure conservation index | 0.66 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2853171 114 + 27905053 UUCAUCCCCCUACUCCAACCAUCCCUCCUCCAUCCAGCGGUGGCUCAUCUUCAGCUCACCGUUGCUCACUCGGCGUCUUUGCCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA ..................................(((((((((((.......))).)))))))).....((((((....))))))..(((....)))................. ( -25.70) >DroSec_CAF1 128274 114 + 1 UUCAUACCCCUCCUGCAACCUACCACCCUCCAUCCGUCGGUGGCUCAUCUUCAGCUCACCGCUGCUCACUCGGCGUCUUCGUCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA .............((((((................(.((((((((.......))).)))))).((....((((((....))))))...))))).)))................. ( -23.30) >DroSim_CAF1 133099 114 + 1 UUCAUACCCCUCCUCCAACCAUCCACCCUCCAUCCGUCGGUGGCUCAUCUUCAGCUCACCGCUGCUCACUCGGCGUCUUCGUCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA ......................(((((..(.....)..)))))........((((.....)))).....((((((....))))))..(((....)))................. ( -20.00) >DroYak_CAF1 141208 109 + 1 UUCAGCGCCCUCCUCCAUGCAACCCCC-----UUCAUCGGUGGUUCAUCUUAAGCUCGCCGCUGUUCAGUCGCCGUCUUCGCCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA ..((((((........(((.((((.((-----......)).))))))).........).)))))...(((((.((....)).)))))(((....)))................. ( -22.03) >DroAna_CAF1 120371 100 + 1 UUCGC-GCCCUCCUCGGGCCACCCCUA----UUCCUUUGGUGGCUCAUCUUCUGCUCACCGUAGCUCACUCGACGUC---------UUGUGCUCGCACUUAAAAAUUAAUUUAA ...((-((...(.((((((((((....----.......)))))))).....((((.....)))).......)).)..---------..))))...................... ( -21.50) >consensus UUCAUACCCCUCCUCCAACCAACCCCCCUCCAUCCAUCGGUGGCUCAUCUUCAGCUCACCGCUGCUCACUCGGCGUCUUCGCCGACUUGCGUUCGCACUUAAAAAUUAAUUUAA ..................................((.((((((((.......))).))))).)).....((((((....))))))..(((....)))................. (-14.82 = -15.10 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:07 2006