Locus 8289

Sequence ID 3R_DroMel_CAF1
Location 22,148,561 – 22,148,681
Length 120
Max. P 0.500000
window13366

overview

Window 6

Location 22,148,561 – 22,148,681
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.72
Mean single sequence MFE -25.74
Consensus MFE -21.52
Energy contribution -21.40
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.60
Structure conservation index 0.84
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22148561 120 + 27905053
UGGUGUUGACUAAAUUUAGUUGAAAAUACAGUUGAACCUUGAAAAUGAGCGUGGAAAUCUGUGCAUAAUUGUUUGGAAAAUGUUAGCACAAUUCACACAUCAAACCGUAAACCAAAACAA
((((.(..((((....))))..)...(((..((((..(((......))).(((..(((.(((((.((((...((....)).))))))))))))..))).))))...))).))))...... ( -23.40)
>DroSec_CAF1 79026 120 + 1
UGGUGUUGACUAAAUUUAGUUGAAACUACAGCUGAACCUUGAAAAUGAGCGUGGAAAUCUGUGCAUAAUUGUUUGGAAAAUGUUUGCACAAUUCACACAUCACACCGUAAACCAAAACCA
.(((((.((.....((((((((......))))))))..............(((..(((.((((((..(((........)))...)))))))))..))).))))))).............. ( -27.90)
>DroSim_CAF1 73500 120 + 1
UGGUGUUGACUAAAUUUAGUUGAAACUACAGCUGAACCUUGAAAAUGAGCGUGGAAAUCUGUGCAUAAUUGUUUGGAAAAUGUUUGCACAAUUCACACAUCACACCGUAAACCAAAACCA
.(((((.((.....((((((((......))))))))..............(((..(((.((((((..(((........)))...)))))))))..))).))))))).............. ( -27.90)
>DroYak_CAF1 71913 120 + 1
UGGUGUUGACUAAAUAUAGUUGAAAAUACAGUUGAACCUUGAAAAUGAGCGUGGAAAUCUGUGCAUAAUUGUUUGGAAAAUGUUUGCACAAUUCACACAUCAAAACGUUAACUGAAAUUA
.....(..((((....))))..).....(((((((..........(((..(((..(((.((((((..(((........)))...)))))))))..))).))).....)))))))...... ( -23.76)
>consensus
UGGUGUUGACUAAAUUUAGUUGAAAAUACAGCUGAACCUUGAAAAUGAGCGUGGAAAUCUGUGCAUAAUUGUUUGGAAAAUGUUUGCACAAUUCACACAUCAAACCGUAAACCAAAACCA
((((....((....((((((((......)))))))).........(((..(((..(((.((((((..(((........)))...)))))))))..))).)))....))..))))...... (-21.52 = -21.40 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:59 2006