Locus 8288

Sequence ID 3R_DroMel_CAF1
Location 22,148,215 – 22,148,330
Length 115
Max. P 0.500000
window13365

overview

Window 5

Location 22,148,215 – 22,148,330
Length 115
Sequences 4
Columns 115
Reading direction forward
Mean pairwise identity 94.20
Mean single sequence MFE -29.62
Consensus MFE -28.12
Energy contribution -28.12
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -1.30
Structure conservation index 0.95
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22148215 115 + 27905053
CACUUGAACGCUUCUCCCCGCUAAAAGCCGCUUACAGUCUGGCCUUUUCGGUUGGCGGUCUUGCUCAAGCAAAGAAAAAAGCCAAAAACACAGAAGUGAAGCAAGUAAAGCAGAA
.(((((..(((((((..(((..(((.(((((.....))..))).))).)))(((((..((((((....)).)))).....)))))......)))))))...)))))......... ( -31.70)
>DroSec_CAF1 78676 115 + 1
CACUUGAACGCUUCUCCCCGCUACAAGCCGCUUACAGUCUGGUCUUUUUGGUUGGCCGUCUUGCCCAAGCAAUGAGAAAAGCCAAAAACACAGAAGUGAAGCAAGUAAAGCAGAA
.........((((..(...((.....)).((((....((((...(((((((((.....((((((....)))).))....)))))))))..))))....))))..)..)))).... ( -27.70)
>DroSim_CAF1 73157 115 + 1
CACUUGAACGCUUCUCCCCGCUAAAAGCCGCUUACAGUCUGGCCUUUUUGGUUGGCGGUCUUGCCCAAGCAAGGAGAAAAGCCAAAAACACAGAAGUGAAGCAAGUAAAGCAGAA
.(((((..(((((((...........(((((.....))..))).(((((((((.....((((((....)))))).....)))))))))...)))))))...)))))......... ( -32.20)
>DroYak_CAF1 71544 115 + 1
CACUUGAACGCUUCUCCCUGCUAAAAGCCGCUUACAGUCUGGCCUUUUCGGUUGGUGGUCUUGCCCAAGCAAGGAAAAAAACCAAAAACACAGAAGUAAAGCAAGUAAAGUAGAA
.((((..((((........))........((((....((((...((((.((((..(..((((((....))))))..)..)))).))))..))))....))))..)).)))).... ( -26.90)
>consensus
CACUUGAACGCUUCUCCCCGCUAAAAGCCGCUUACAGUCUGGCCUUUUCGGUUGGCGGUCUUGCCCAAGCAAGGAAAAAAGCCAAAAACACAGAAGUGAAGCAAGUAAAGCAGAA
.(((((..(((((((..(((..(((.(((((.....))..))).))).)))(((((..((((((....))))))......)))))......)))))))...)))))......... (-28.12 = -28.12 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:58 2006