Locus 8287

Sequence ID 3R_DroMel_CAF1
Location 22,147,867 – 22,147,985
Length 118
Max. P 0.951765
window13364

overview

Window 4

Location 22,147,867 – 22,147,985
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.98
Mean single sequence MFE -27.40
Consensus MFE -25.84
Energy contribution -26.09
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.94
SVM decision value 1.42
SVM RNA-class probability 0.951765
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22147867 118 - 27905053
CCGUUCCAUUCAUAAAACAACACCGAAUUCCGCUCGCCAAAUGAAAUCACAGCCCAUCGCUUGGCACUUCGUAUUCGGUGUGCCCCUAGGAGACCGAUUCCCAGCGUCGAAAAAAAAA--
........(((........(((((((((..((...(((((.(((............))).)))))....)).)))))))))..........((((........).)))))).......-- ( -23.60)
>DroSec_CAF1 78321 118 - 1
CCGUUCCAUUCAUAAAACAACACCGAAUUCCGCUCGCCAAAUGAAAUCACAGCCCAUCGUUUGGCACUUCAUAUUCGGUGUGCCCCUAGGAGAGCGAUUCCCAGCGCCGAAAAAAGAA--
........(((........(((((((((.......(((((((((............))))))))).......))))))))).......((...((........)).))))).......-- ( -29.64)
>DroSim_CAF1 72809 118 - 1
CCGUUCCAUUCAUAAAACAACACCGAAUUCCGCUCGCCAAAUGAAAUCACAGCCCAUCGUUUGGCACUUCAUAUUCGGUGUGCCCCUAGGAGACCGAUUCCCAGCGCCGAAAAAAGAA--
........(((........(((((((((.......(((((((((............))))))))).......)))))))))((..((.((((.....)))).)).)).))).......-- ( -28.14)
>DroYak_CAF1 71191 120 - 1
CCAUUUCAUUCAUAAAACAACACCGAAUUCCGUUCGCCAAAUGAAAUCACGGCCCAUCGUUUGGCACUUCAUAUUCGGUGUGCCCCUAGGAGACCAAUUCCAACCGCCGAAAAAAAAAAU
...((((............(((((((((.......(((((((((............))))))))).......))))))))).......((((.....)))).......))))........ ( -28.24)
>consensus
CCGUUCCAUUCAUAAAACAACACCGAAUUCCGCUCGCCAAAUGAAAUCACAGCCCAUCGUUUGGCACUUCAUAUUCGGUGUGCCCCUAGGAGACCGAUUCCCAGCGCCGAAAAAAAAA__
........(((........(((((((((.......(((((((((............))))))))).......))))))))).......((((.....)))).......)))......... (-25.84 = -26.09 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:57 2006