Locus 8285

Sequence ID 3R_DroMel_CAF1
Location 22,146,528 – 22,146,646
Length 118
Max. P 0.830440
window13361

overview

Window 1

Location 22,146,528 – 22,146,646
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.35
Mean single sequence MFE -20.30
Consensus MFE -17.94
Energy contribution -17.50
Covariance contribution -0.44
Combinations/Pair 1.09
Mean z-score -1.72
Structure conservation index 0.88
SVM decision value 0.71
SVM RNA-class probability 0.830440
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22146528 118 + 27905053
AAUCAAAGUCGAACUUUAUGGACACGAA-A-AAAAAGUAAAAAAAAAUCAAAACGACAGCCAAAAGUCUGUGGCAAAUUUAAUUUAUCUGUUUGAUUUUAUUUGCAAAAAGUGUCAGAUA
.(((((((.....))))...(((((...-.-.....(((((..(((((((((..((..((((........))))((((...)))).))..))))))))).))))).....))))).))). ( -19.24)
>DroSec_CAF1 76979 119 + 1
AAUCAAAGUCAAACUUUAUGGAAACGAG-AAAAAAUAUAAAAAAAAGUCAAAACGACAGCCAAAAGUCUGUGGCAAAUUUAAUUUAUCUGUUUGAUUUUAUUUGCAAAAAGUGUCAGAUA
....((((((((((....((....))((-(.(((............(((.....))).((((........))))........))).)))))))))))))(((((((.....)).))))). ( -22.10)
>DroSim_CAF1 71466 120 + 1
AAUCAAAGUCAAACUUUAUGGAAACGAGGAAAAAAUAUAAAAAAAAGUCAAAACGACAGCCAAAAGUCUGUGGCAAAUUUAAUUUAUCUGUUUGAUUUUAUUUGCAAAAAGUGUCAGAUA
....((((((((((....((....)).(((.(((............(((.....))).((((........))))........))).)))))))))))))(((((((.....)).))))). ( -22.00)
>DroYak_CAF1 69609 113 + 1
AAUCAAAGUCGGACUUUAUGGAAACGACAAAAAAAUAUACAAA-------AAACGACAGCCAAAAGUCUGUGGCAAAUUUAAUUUAUCUGUUUGAUUUUAUUUGCAAAAAGUGUCAGAUA
.(((.....((((((((.(((...((.................-------...))....)))))))))))..((((((..((((.........))))..))))))...........))). ( -17.85)
>consensus
AAUCAAAGUCAAACUUUAUGGAAACGAG_AAAAAAUAUAAAAAAAAGUCAAAACGACAGCCAAAAGUCUGUGGCAAAUUUAAUUUAUCUGUUUGAUUUUAUUUGCAAAAAGUGUCAGAUA
....((((((((((....((....))................................((((........))))...............))))))))))(((((((.....)).))))). (-17.94 = -17.50 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:54 2006