Locus 8284

Sequence ID 3R_DroMel_CAF1
Location 22,146,293 – 22,146,408
Length 115
Max. P 0.703532
window13360

overview

Window 0

Location 22,146,293 – 22,146,408
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.61
Mean single sequence MFE -27.31
Consensus MFE -22.83
Energy contribution -23.57
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.84
SVM decision value 0.36
SVM RNA-class probability 0.703532
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22146293 115 + 27905053
AGCCAGCGGAU-----GCACAUGUAAUGGCAAUUGAUUUACAAUCUAUGCGAAUCAAUAUAAGCCGAGUAGCAAAAAAAUUAUAGGCAUAUACGUGGGUAUGUGUGUAUAUAAUUAUUCA
.((...(((.(-----((.(((...))))))(((((((..((.....))..))))))).....)))....))........((((.((((((((....)))))))).)))).......... ( -27.40)
>DroSec_CAF1 76744 115 + 1
AGCCAGCGGAU-----GCACAUGUAAUGGCAAUCGAUUUACAAGCUAUACGAAUCAAUACAAGCCGAGUAGCAAAAAAAUUAUAGGCAUAUACGCGGGUAUGUGUGUAUAUAAUUAUUCA
.(((..(((.(-----((.(((...)))))).)))........(((((.((.............)).)))))............)))(((((((((....)))))))))........... ( -25.62)
>DroSim_CAF1 71231 115 + 1
AGCCAGCGGAU-----GCACAUGUAAUGGCAAUUGAUUUACAAGCUAUACGAAUCAAUACAAGCCGAGUAGCAAAAAAAUUAUAGGCAUAUACGCGGGUAUGUGUGUAUAUAAUUAUUCA
.(((.((.(.(-----((....))).).))...((((((....(((((.((.............)).)))))....))))))..)))(((((((((....)))))))))........... ( -25.02)
>DroYak_CAF1 69369 120 + 1
AGCCAGCGGAUGCGAUGCACAUGUAAUGGCAAUUGAUUUACAAGCUAUGCGAAUCAAUACGAGCCGAGUAGCAAAAAAAUUAUAGGCAUAUACGUGGGUAUGUGUAUAUAUAAUUAUUCA
.(((((((..(((...)))..)))..)))).............(((((.((..((.....))..)).))))).....(((((((.((((((((....))))))))...)))))))..... ( -31.20)
>consensus
AGCCAGCGGAU_____GCACAUGUAAUGGCAAUUGAUUUACAAGCUAUACGAAUCAAUACAAGCCGAGUAGCAAAAAAAUUAUAGGCAUAUACGCGGGUAUGUGUGUAUAUAAUUAUUCA
.((...(((.......((.(((...))))).((((((((.((.....)).)))))))).....)))....)).....(((((((.((((((((....))))))))...)))))))..... (-22.83 = -23.57 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:53 2006