| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,144,825 – 22,145,052 |
| Length | 227 |
| Max. P | 0.961945 |
| Location | 22,144,825 – 22,144,939 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.16 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -24.19 |
| Energy contribution | -24.25 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.961945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22144825 114 + 27905053 CCAUUCAG------UAAAAACACCAGCUUCGUCAACGACCUGCUCCAAUUCGAUUUAUGCAGCCCAAGGUCAACAGCAACGGCUUUAAAAUGCAAACUCAGGCGAAGUUGAAUCUCCAAA ........------.........((((((((((...((((((((.((..........)).)))...)))))..........((........)).......)))))))))).......... ( -25.80) >DroSec_CAF1 75172 114 + 1 CCAUUAAG------AAAAAACACCAGCUUCGUCAACGACCUGCUCCAAUUCGAUUUAUGCAGCCCAAGGUCAACAGCAACGGCUUUAAAAUGCAAACUCAGGCGAAGUUGAAUCUCCAAA ........------.........((((((((((...((((((((.((..........)).)))...)))))..........((........)).......)))))))))).......... ( -25.80) >DroSim_CAF1 69662 114 + 1 CCAUUAAG------AAAAAACACCAGCUUCGUCAACGACCUGCUCCAAUUCGAUUUAUGCAGCCCAAGGUCAACAGCAACGGCUUUAAAAUGCAAACUCAGGCGAAGUUGAAUCUCCAAA ........------.........((((((((((...((((((((.((..........)).)))...)))))..........((........)).......)))))))))).......... ( -25.80) >DroYak_CAF1 67815 120 + 1 CCAUUCAGUAAAAAAAAAAACACCAGCUUCGUCAACGACCUGCUCCAAUUCGAUUUAUGCAGUCCAAGGUCAACAGCAACGGCUUUAAAAUGCAAACGCAGGCAAAGUUGAAUCUCCAAA .......................((((((.(((...((((((((.((..........)).)))...)))))....((....((........))....)).))).)))))).......... ( -20.90) >consensus CCAUUAAG______AAAAAACACCAGCUUCGUCAACGACCUGCUCCAAUUCGAUUUAUGCAGCCCAAGGUCAACAGCAACGGCUUUAAAAUGCAAACUCAGGCGAAGUUGAAUCUCCAAA .......................((((((((((...((((((((.((..........)).)))...)))))..........((........)).......)))))))))).......... (-24.19 = -24.25 + 0.06)
| Location | 22,144,939 – 22,145,052 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.85 |
| Mean single sequence MFE | -26.75 |
| Consensus MFE | -19.70 |
| Energy contribution | -19.95 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22144939 113 - 27905053 CAUUUGCUACAUCUUUACACCGCCUCGACAAAAGUCGUCCGAAACUGAAAAGUUCAAAAAACGCGAGACAAAAGUCGCGGCAACAAAGGCAGCA-------GCAAAAGCAGAAGCAUUCA ....((((.(...........((((((((....))))...(((.((....)))))......(((((........))))).......))))....-------((....)).).)))).... ( -24.70) >DroSec_CAF1 75286 113 - 1 CAUUCGCUACAUCUUUACACCGCUUCGACAAAAGUCGGGCGAAACUGAAAAGUUCAAAAAACGCGAGACAAAAGUCGCGGCAACAAAGGCAGCA-------GCAAAAGCAGAAGCAUUAA ..((((((...(((((....((((.((((....)))))))).((((....)))).......(((((........))))).....))))).))).-------((....)).)))....... ( -26.00) >DroSim_CAF1 69776 113 - 1 CAUUCGCUACAUCUUUACACCGCUUCGACAAAAGUCGGCCGAAACUGAAAAGUUCAAAAAACGCGAGACAAAAGUCGCGGCAACAAAGGCAGCA-------GCAAAAGCAGAAGCAUUCA .....(((.(...........(((.((((....))))((((((.((....)))))......(((((........)))))........)))))).-------((....)).).)))..... ( -27.80) >DroYak_CAF1 67935 120 - 1 CAUUCGCUACAUCUUUACAUCGGUUCGGCAAAAGUCGGCCGAAACCCAAAAGUUCAAAAAACGUGAGACAAAAGUUGCGGCAACAAAGGCAGCAGCAAGCAGCAAAAGCAGAAGCAUUCA ..((((((.....(((((.(((((.((((....))))))))).........(((.....))))))))......(((((.((.......)).))))).))).((....)).)))....... ( -28.50) >consensus CAUUCGCUACAUCUUUACACCGCUUCGACAAAAGUCGGCCGAAACUGAAAAGUUCAAAAAACGCGAGACAAAAGUCGCGGCAACAAAGGCAGCA_______GCAAAAGCAGAAGCAUUCA .....(((.(..((((.....((((((((....))))((((((.((....))))).......((((........))))))).....)))).((........)).))))..).)))..... (-19.70 = -19.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:52 2006