| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,144,667 – 22,144,786 |
| Length | 119 |
| Max. P | 0.761164 |
| Location | 22,144,667 – 22,144,786 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.87 |
| Mean single sequence MFE | -38.06 |
| Consensus MFE | -28.70 |
| Energy contribution | -31.18 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22144667 119 + 27905053 GUCCAUUUAAGAACUUCAAGGAGCACAGGUAACCGCAGGCCAUUGGCCUCCUUCACAUUAAAAUGCCAA-GGGCUGCUGUGGAUGCUGAGGGGAUUUCCCACUCAACCAGCUCAAGGAUG ((((......(.....)...((((...((((.(((((((((.(((((.................)))))-.)))..)))))).))))((((((....))).))).....))))..)))). ( -41.33) >DroSec_CAF1 75013 119 + 1 GUCCAUUUAAGAACUUAAAGGAGCACAGGUAACCGCAGGCCAUUGGUCUCCUUCACAUUAAAAUGCCAA-GGGCUGAAGUGGAUGCUGAGGGGAUUUCCCACUCAACCAGCUCAAGGAUG ((((.(((((....))))).((((...((((.((((.((((.(((((.................)))))-.))))...)))).))))((((((....))).))).....))))..)))). ( -39.83) >DroSim_CAF1 69503 119 + 1 GUCCAUUUAAGAACUUCAAGGAGCACAGGUAACCGCAGGCCAUUGGCCUCCUUCACAUUAAAAUGCCAA-GGGCUGAAGUGGAUGCUGAGGGGAUUUCCCACUCAAGCAGCUCAAGGAUG ((((......(.....)...((((........((((.((((.(((((.................)))))-.))))...)))).((((((((((....))).))).))))))))..)))). ( -41.13) >DroEre_CAF1 70280 106 + 1 GUCCGUUGAAGAACUCCAAGGAGCACAGGUAACCGCAGGCCAUUGGCCUCCUGCACAUUAAAAUGCCGA-GGGCUA-AGUGGAUGCUGAGGGGAUUUCCAACUCAACC------------ ....((((.(((.((((..((.((....))..))(((..(((((((((..(.(((........))).).-.)))).-))))).)))...)))).))).))))......------------ ( -31.30) >DroYak_CAF1 67656 120 + 1 GUCCGUUGAAGAACUUCAAGGAGCACAGGUAACCGCAGGCCAUUGGCCUCCUUCACAUUAAAAUGCCAAAUGGCUAAAGUAGAUGCUGUGGGGAUUUCCCACUCAACCAGCUCAAGGAUG ((((.(((((....))))).((((...((((.(..(.((((((((((.................))).)))))))...)..).))))(((((.....))))).......))))..)))). ( -36.73) >consensus GUCCAUUUAAGAACUUCAAGGAGCACAGGUAACCGCAGGCCAUUGGCCUCCUUCACAUUAAAAUGCCAA_GGGCUGAAGUGGAUGCUGAGGGGAUUUCCCACUCAACCAGCUCAAGGAUG ((((.(((((....))))).((((...((((.(((((((((...)))))...............(((....)))....)))).))))((((((....))).))).....))))..)))). (-28.70 = -31.18 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:50 2006