Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,851,719 – 2,851,816 |
Length | 97 |
Max. P | 0.619776 |
Location | 2,851,719 – 2,851,816 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.97 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -12.91 |
Energy contribution | -12.94 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.16 |
Mean z-score | -1.56 |
Structure conservation index | 0.63 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2851719 97 + 27905053 UAAGCCUGCAAC------------UCCUCCUUUUCCAACCGCACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC ...(((((((..------------........................))))).).)((((...))))((((((((((........))))))))))............. ( -16.17) >DroSec_CAF1 126818 97 + 1 UAAGCCUGCAAC------------UCCUCCUUUUCCAACCGCACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC ...(((((((..------------........................))))).).)((((...))))((((((((((........))))))))))............. ( -16.17) >DroSim_CAF1 131621 93 + 1 ----CCUGCAAC------------UCCUCUUUUUCCAACCGCACCUCAUGCAGUGUCGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC ----........------------..........(((.(.((((........)))).).)))......((((((((((........))))))))))............. ( -17.20) >DroEre_CAF1 129646 109 + 1 UAAGCCUGGGACUCCUCCCUCUCCCUUUCCCUUUCCCAGCGAACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC ...((.(((((......................))))))).........(((.((((((..((((....)))).........))))))..)))................ ( -21.35) >DroYak_CAF1 139801 109 + 1 UAAGCCUGGGCCUGGGCCUGAGACUCCUCCCUUUCCACCCGAACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAACGCUCAAUAACUUUAUUCC ......((((((((((...((((........))))..))))..(.((((...)))).)..))))))..(((((.((((........)))).)))))............. ( -24.40) >DroAna_CAF1 119063 83 + 1 UGAGCCUGCAAC------------GCC--------------CGCCGCAUGCGGCGAAGAUGGACCAUCUGGGCGUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC (((((....(((------------(((--------------(((((....))))..(((((...))))))))))))..(((....)))...)))))............. ( -28.10) >consensus UAAGCCUGCAAC____________UCCUCCUUUUCCAACCGCACCUCAUGCAGUGACGAUGGCCCAUCUGGGCAUUUAUAACUCGUUAAAUGCUCAAUAACUUUAUUCC .....(((((......................................)))))....((((...))))((((((((((........))))))))))............. (-12.91 = -12.94 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:06 2006