Locus 8275

Sequence ID 3R_DroMel_CAF1
Location 22,141,115 – 22,141,205
Length 90
Max. P 0.873207
window13345

overview

Window 5

Location 22,141,115 – 22,141,205
Length 90
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 82.40
Mean single sequence MFE -29.18
Consensus MFE -12.86
Energy contribution -15.14
Covariance contribution 2.28
Combinations/Pair 1.19
Mean z-score -2.89
Structure conservation index 0.44
SVM decision value 0.88
SVM RNA-class probability 0.873207
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22141115 90 + 27905053
GCCAUUUUAAUUGAGCCAGUUUGUUUAAUUAUG--UGGCCAGUUUGUAAUUAUGACG----------------CCCGCGUGGGCGUUGAAAUUGAAUGUGGCGCGGCA
(((....(((((((((......))))))))).(--((.(((.....(((((.(((((----------------(((....)))))))).)))))....))))))))). ( -31.80)
>DroSec_CAF1 71453 105 + 1
GCCAUU-UAAUUGAGCCGGUUUGUUUAAUUAAACACUGAAAUUUGAAAAUUAUAAAGUCAAAUAUUUCAGGCUGCCGCGUGGGAUUUGAAAUUGAAUGUGGC--AGCA
....((-(((((((((......)))))))))))..(((((((((((...........))))..)))))))((((((((((..(((.....)))..)))))))--))). ( -32.40)
>DroSim_CAF1 64456 106 + 1
GCCAUUUUAAUUGAGCCAGUUUGUUUAAUUAAACAUUGAAAUUUGAAAAUUAUAAAGUCAAAUAUUUCAGGCUGCCGCGUGGGCGUUGAAAUUGAAUGUGGC--AGCA
.....(((((((((((......)))))))))))..(((((((((((...........))))..)))))))((((((((((...((.......)).)))))))--))). ( -29.00)
>DroEre_CAF1 66725 106 + 1
GCCAUUUUAAUUGAGCCAGUUUGUUUAAUUAAACAUUGAAAUUAGAAAAUUAUAAAGUCAAAUAUUUUAGGCCACCGCGUUGGCGUUGAAAUGGAAUGUGGC--GUCA
((((((((((((((((......)))))))))))..((((..(((........)))..)))).((((((((((((......)))).))))))))....)))))--.... ( -25.20)
>DroYak_CAF1 64038 106 + 1
GCCAUUUUAAUUGAGCCAGUUUGUUUAAUUAAACAUUGAAAUUAGAAAAUUAUAAAGUCAAAUAUUUCAAGCCACCGCGUUGGCGUUGAAAUUGAAUGUGGC--GGCA
(((..(((((((((((......))))))))))).......................((((...(((((((((((......)))).)))))))......))))--))). ( -27.50)
>consensus
GCCAUUUUAAUUGAGCCAGUUUGUUUAAUUAAACAUUGAAAUUUGAAAAUUAUAAAGUCAAAUAUUUCAGGCCACCGCGUGGGCGUUGAAAUUGAAUGUGGC__GGCA
((((((((((((((((......)))))))))))..............................(((((((((((......)))).))))))).....)))))...... (-12.86 = -15.14 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:33 2006