Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,140,296 – 22,140,416 |
Length | 120 |
Max. P | 0.923481 |
Location | 22,140,296 – 22,140,416 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.75 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -28.84 |
Energy contribution | -28.72 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.39 |
Structure conservation index | 0.99 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923481 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22140296 120 - 27905053 UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCACAAUUGUUUGUCUGAUGGUGCCGCGCUCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCAACUC .....((((...((((((...((((((((((..((....)).)).)))))))))))).))....((((((((.......))))))))..........................))))... ( -29.90) >DroSec_CAF1 70640 120 - 1 UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUUCCGCGCUCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC .....((((...(((((....((((((((((.(......)..)).)))))))).))).))....((((((((.......))))))))..........................))))... ( -26.00) >DroSim_CAF1 63643 120 - 1 UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUGCCGAGCUCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC .....((((...((((((...((((((((((.(......)..)).))))))))))).)))....((((((((.......))))))))..........................))))... ( -29.70) >DroEre_CAF1 65933 120 - 1 UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUGCCGCGCCCAACAUGGCGUAUACGUGAUGCCAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC .....((((...((((((...((((((((((.(......)..)).)))))))))))).))....((((((((.......))))))))..........................))))... ( -30.90) >DroYak_CAF1 63230 120 - 1 UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUGCCGCGCGCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC .....((((...((((((...((((((((((.(......)..)).)))))))))))).))....((((((((.......))))))))..........................))))... ( -29.50) >consensus UAUACUUGAAAUGCUGGCCUUGCCAUCAGCAUCUCAAUUGUUUGUCUGAUGGUGCCGCGCUCAACAUGGCGUAUACGUGAUGCUAUGAUAAUCAUGCUUAUUUACAAUAAAUCUCGACUC .....((((...((((((...((((((((((.(......)..)).)))))))))))).))....((((((((.......))))))))..........................))))... (-28.84 = -28.72 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:31 2006