Locus 8273

Sequence ID 3R_DroMel_CAF1
Location 22,140,062 – 22,140,182
Length 120
Max. P 0.971030
window13343

overview

Window 3

Location 22,140,062 – 22,140,182
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.42
Mean single sequence MFE -26.22
Consensus MFE -24.52
Energy contribution -24.32
Covariance contribution -0.20
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.94
SVM decision value 1.67
SVM RNA-class probability 0.971030
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22140062 120 + 27905053
UUGAUUAUUUUCAAGGGUGCCAAACAAAGCACUCAGCUCGAGGGUAUAAUAACGAUAAUAGCAACAAUAAUAGUCUUGAGGUGCUGUCAUCAUAAUGUUUAUAACAUUUCUCUCCUCAUC
((((......))))((((((........)))))).....(((((.........(((.((((((.(((........)))...)))))).)))..(((((.....)))))....)))))... ( -26.90)
>DroSec_CAF1 70405 120 + 1
UUGAUUAUUUUCAAGGGUGCCAAACAAAGCACUCAGCUCGAGGGUAUAAUAACGAUAAUAGCAAAAAUAAUAGUCUUGAGGUGCUGUCAUCAUAAUGUUUAUAACAUUUCUCUCCUCAUC
((((......))))((((((........)))))).....(((((.........(((.((((((....(((.....)))...)))))).)))..(((((.....)))))....)))))... ( -25.10)
>DroSim_CAF1 63409 120 + 1
UUGAUUAUUUUCAAGGGUGCCAAACAAAGCACUCAGCUCGAGGGUAUAAUAACGAUAAUAGCAAAAAUAAUAGUCUUGAGGUGCUGUCAUCAUAAUGUUUAUAACAUUUCUCUCCUCAUC
((((......))))((((((........)))))).....(((((.........(((.((((((....(((.....)))...)))))).)))..(((((.....)))))....)))))... ( -25.10)
>DroEre_CAF1 65694 120 + 1
UUGAUUAUUUUCAAGGGUGCCAAACAAAGCACUCAGCUCGGGGGUAUAAUAACGAUAAUAGCAAAAAUAAUAGUCUUGAGGUGCUGUCAUCAUAAUGCUUAUAACAUUGCCCUCUUCCUC
((((......))))((((((........)))))).....((((((........(((.((((((....(((.....)))...)))))).)))..((((.......))))))))))...... ( -27.10)
>DroYak_CAF1 62996 120 + 1
UUGAUUAUUUUCAAGGGUGCCAAACAAAGCACUCAGCUCGAGGGUAUAAUAACGAUAAUAGCAAAAAUAAUAGUCUUGAGGUGCUGUCAUCAUAAUGUUCCUAACAUUUCCCUCUUCUUC
((((......))))((((((........)))))).....(((((.........(((.((((((....(((.....)))...)))))).)))..(((((.....))))).)))))...... ( -26.90)
>consensus
UUGAUUAUUUUCAAGGGUGCCAAACAAAGCACUCAGCUCGAGGGUAUAAUAACGAUAAUAGCAAAAAUAAUAGUCUUGAGGUGCUGUCAUCAUAAUGUUUAUAACAUUUCUCUCCUCAUC
((((......))))((((((........)))))).....(((((.........(((.((((((....(((.....)))...)))))).)))..(((((.....))))).)))))...... (-24.52 = -24.32 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:30 2006