Locus 8271

Sequence ID 3R_DroMel_CAF1
Location 22,136,928 – 22,137,044
Length 116
Max. P 0.829941
window13337

overview

Window 7

Location 22,136,928 – 22,137,044
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.19
Mean single sequence MFE -38.13
Consensus MFE -16.03
Energy contribution -16.78
Covariance contribution 0.75
Combinations/Pair 1.05
Mean z-score -2.41
Structure conservation index 0.42
SVM decision value 0.71
SVM RNA-class probability 0.829941
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22136928 116 - 27905053
CA---UCCCGUGUCAAGUGAUACUCGUACUUUGGGCAGGCAGCCAAGUGCUUGGCAAUAUGCUAAAAGGGCAGCUAGCUGCCUGGCAAAAGGAUGCAU-UCAGAAAGUUAAGGGCACAAA
..---....(((((...((((..((...((((.(.((((((((..((((((((((.....))))....)))).)).)))))))).).))))((.....-)).))..))))..)))))... ( -38.40)
>DroPse_CAF1 93551 104 - 1
CAGCAGCACCUGUCACCUGAUACCCGGG----UGGCAGGCAGCCAAGUGCU---------GCUAAGGGGCCA--UACCAGCCUGGCAGGA-GAUGCGUUUCAAAAAGCUAAGCGCACAAA
.((((((((((((((((((.....))))----)))))))........))))---------))).....((((--........))))....-..(((((((.........))))))).... ( -40.00)
>DroSec_CAF1 67268 116 - 1
CA---UCCCGUGUCAAGUGAUACUCGUACUUUGGGCAGGCAGCCAAGUGCUUGGCAAUAUGCUAAAAGGGCACCUAGCUGCCUGGCAAAAGGAUGCAU-UCAGAAAGUUAAGGGCACAAA
..---....(((((...((((..((...((((.(.((((((((...(((((((((.....))))....)))))...)))))))).).))))((.....-)).))..))))..)))))... ( -41.00)
>DroYak_CAF1 59723 116 - 1
CA---UCCCGUGUCAAGUGAUACUCGUACUUUGGGCAGGUAGCCAAGUGCUUGGCAAUAUGCUAAAAGGGCAGCUAGCUGUCUGGCAAGAGGAUGCAU-UCAGAAAGUUAACGGCACAAA
..---....(((((...........(..((((.((((.((.(((((....))))).)).)))).))))..).(.(((((.(((((((......)))..-.)))).))))).))))))... ( -34.70)
>DroAna_CAF1 107497 104 - 1
CA---GCCCGUGUCAAGUGAUA------CCUUGGGCAGGCAGCCAAGUGCUUGGCAAUAUGCUAAAAGGGCAG----CUGCCUUGCA--AGGAAGCAU-UCAAAAAGUUAAGCGCACAAA
..---(((((((((....))))------)...))))..........(((((((((....((((.....))))(----((.(((....--))).)))..-.......)))))))))..... ( -35.00)
>DroPer_CAF1 94263 104 - 1
CAGCAGCACCUGUCACCUGAUACCCGGG----UGGCAGGCAGCCAAGUGCU---------GCUAAGGGGCCA--UACCAGCCUUGCAGGA-GAUGCGUUUCAAAAAGCUAAGCGCACAAA
.((((((((((((((((((.....))))----)))))))........))))---------)))..(((((..--.....)))))......-..(((((((.........))))))).... ( -39.70)
>consensus
CA___GCCCGUGUCAAGUGAUACUCGUACUUUGGGCAGGCAGCCAAGUGCUUGGCAAUAUGCUAAAAGGGCAG_UAGCUGCCUGGCAAGAGGAUGCAU_UCAAAAAGUUAAGCGCACAAA
..........((((....))))...........(((.....)))..((((.................(((((......))))).(((......))).................))))... (-16.03 = -16.78 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:24 2006