Locus 8269

Sequence ID 3R_DroMel_CAF1
Location 22,132,152 – 22,132,256
Length 104
Max. P 0.561411
window13334

overview

Window 4

Location 22,132,152 – 22,132,256
Length 104
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 91.17
Mean single sequence MFE -31.36
Consensus MFE -27.76
Energy contribution -28.00
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.20
Structure conservation index 0.89
SVM decision value 0.06
SVM RNA-class probability 0.561411
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22132152 104 + 27905053
CGUUAUUCUCCACAAUUUUUAUCCGCAGCUGCUUUUAUAAUCCCCAGUGGCCAACACUGUUAAGUUGGUUAGUGGGUUUCUGG--------UGCUUUGCAACGGUGCGGGCU----
.....................((((((.((((...(((.(..((((.((((((((........)))))))).))))..)...)--------))....)))..).))))))..---- ( -30.60)
>DroSec_CAF1 62268 103 + 1
CGUUAUUCUCCACUAUUUUUAUCCGCAGCUGCU-UCAUAAUCCCCAGUGGCCAACACUGUUAAGUUGGUUAGUGGGUUUCUGG--------UGCUUUGCCACGGUGCGGGCU----
.....................((((((.(((..-........((((.((((((((........)))))))).))))....(((--------(.....)))))))))))))..---- ( -32.70)
>DroSim_CAF1 54807 104 + 1
CGUUAUUCUCCACUAUUUUUAUCCGCAGCUGCUUUUAUAAUCCCCAGUGGCCAACACUGUUAAGUUGGUUAGUGGGUUUCUGG--------UGCUUUGCAACGGUGCGGGCU----
.....................((((((.((((...(((.(..((((.((((((((........)))))))).))))..)...)--------))....)))..).))))))..---- ( -30.60)
>DroEre_CAF1 54536 112 + 1
CGUUAUUCUCCACUAUUUAUAUCCGCAGCUGCUUUUAUAAUCCCCAGUGGCCAACACUGGUAAGUUGGUUAGUGGGUUUCUGGUGCUCUGGUGCUUUGCAACGGUGCGGGCU----
.....................((((((.((((..........((((.((((((((........)))))))).)))).....((..(....)..))..)))..).))))))..---- ( -34.20)
>DroYak_CAF1 54977 106 + 1
CGUCGUU-UCCACUAUUUUUAUCCGCAGCUGCU-UUAUAAUCCCCAGUGGGCAGCACUGGUAAGUUGGUUAGUGGGUUUCUGG--------UGCUUUGCAACGGUGCGGGCUGCCU
.......-(((((((..((((.(((..((((((-(.............)))))))..))))))).....))))))).....((--------(((((.(((....))))))).))). ( -28.72)
>consensus
CGUUAUUCUCCACUAUUUUUAUCCGCAGCUGCUUUUAUAAUCCCCAGUGGCCAACACUGUUAAGUUGGUUAGUGGGUUUCUGG________UGCUUUGCAACGGUGCGGGCU____
.....................((((((.(((...........((((.((((((((........)))))))).))))...............(((...))).)))))))))...... (-27.76 = -28.00 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:21 2006