Locus 8268

Sequence ID 3R_DroMel_CAF1
Location 22,130,584 – 22,130,702
Length 118
Max. P 0.645823
window13333

overview

Window 3

Location 22,130,584 – 22,130,702
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.69
Mean single sequence MFE -22.74
Consensus MFE -16.47
Energy contribution -18.35
Covariance contribution 1.88
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.72
SVM decision value 0.23
SVM RNA-class probability 0.645823
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22130584 118 - 27905053
GCUCUAUUGGGGCUUAACAUGAAACACUGAAUAGGGUUCAAAGCUGUGAACUCUGCUCUGUGAAAUAUAAUAAACACAGAUACAAAGGG-CAAAGUUUAAAGCAAA-CAACAAAAACAUA
((((((((.((...............)).)))))))).....(((.((((((.(((((((((............))))))........)-)).)))))).)))...-............. ( -26.16)
>DroSec_CAF1 60673 119 - 1
GCUCUAUUGGGGCUUAACAUGAAACACUGAAUAGGGUUCAAAGCUGUGAACUCUGCUCUAUGAAAUAUAAUAAACACAGAUACAAAGGGCCAAAGUUCAAAGCAAA-CAACAAAAACAUA
((((((((.((...............)).)))))))).....(((.((((((..(((((.((....................)).)))))...)))))).)))...-............. ( -24.81)
>DroSim_CAF1 53214 119 - 1
GCUCUAUUGGGGCUUAACAUGAAACACUGAAUAGGGUUCAAAGCUGUGAACUCUGCUCUAUGAAAUAUAAUAAACACAGAUACAAAGGGCCAAAGUUCAAAGCAAA-CAACAAAAACAUA
((((((((.((...............)).)))))))).....(((.((((((..(((((.((....................)).)))))...)))))).)))...-............. ( -24.81)
>DroEre_CAF1 53052 118 - 1
ACUCUAUUGGGGCUUAACAUGAAACACUGAA-AGGGUUCAAAGCUAUGAACUCUGCUC-GUGAAAUAUAAUAAACACAGAUACAAAAGGCCAAGGUUCAAAGAAAAGCAAUAAAAAUAUG
.(((....)))((((.........(((.((.-((((((((......))))))))..))-))).........................(((....))).......))))............ ( -19.00)
>DroYak_CAF1 53513 111 - 1
ACUCUAUUGGGGCUUAACCUGAAACACUGAA-AGGGUUCAAAGCUGUGAACA-------GUGAAAUAUAAUAAACCCAUAUACAAAGGGGCAAAGUUCAAAGCAAA-CAACAAAAAUAUG
......(..((......))..)(((.((...-.)))))....(((.(((((.-------.((............(((.........))).))..))))).)))...-............. ( -18.92)
>consensus
GCUCUAUUGGGGCUUAACAUGAAACACUGAAUAGGGUUCAAAGCUGUGAACUCUGCUCUGUGAAAUAUAAUAAACACAGAUACAAAGGGCCAAAGUUCAAAGCAAA_CAACAAAAACAUA
((((((((.((...............)).)))))))).....(((.((((((.((((((.((....................)).)))).)).)))))).)))................. (-16.47 = -18.35 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:20 2006