Locus 8266

Sequence ID 3R_DroMel_CAF1
Location 22,123,516 – 22,123,607
Length 91
Max. P 0.536191
window13330

overview

Window 0

Location 22,123,516 – 22,123,607
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 82.87
Mean single sequence MFE -35.40
Consensus MFE -25.05
Energy contribution -25.92
Covariance contribution 0.87
Combinations/Pair 1.29
Mean z-score -1.54
Structure conservation index 0.71
SVM decision value 0.01
SVM RNA-class probability 0.536191
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22123516 91 - 27905053
CAACGGUGAUCUGG-AGGUCCGGAAAAUGGACCACA--GUGGGUGGAA--CCGGGAAGUCCUUCCGCCCACCG-GUGUCUGCAGGUGCAGUUAAUCA
....(((...(((.-.((((((.....)))))).))--).(((((((.--..(((....)))))))))))))(-((..((((....))))...))). ( -38.50)
>DroSec_CAF1 53633 91 - 1
CAACGGCGAUCUGG-AGGUCCGGAAAAUGGACCACA--GUAGGUGGAA--CCGGGAAGUCCUUCCGCCCACCG-GUGUCUGCAGGUGCAGUUAAUCA
....((.(..(((.-.((((((.....)))))).))--)..((((((.--..(((....)))))))))).))(-((..((((....))))...))). ( -33.60)
>DroSim_CAF1 46225 91 - 1
CAACGGCGAUCUGG-AGGUCCGGAAAAUGGACCACA--GUGGGUGGAA--CCGGGAAGUCCUUCCGCCCACCG-GUGUCUGCAGGUGCAGUUAAUCA
.(((.((.(((((.-(((((((.....)))))(((.--(((((((((.--..(((....))))))))))))..-))).)).))))))).)))..... ( -39.10)
>DroEre_CAF1 46608 91 - 1
CAACGGCGAUCCGA-AGGUCCGGAAUGUGGACCACA--GUGCGUGGAG--CCGGGAAGUCCUUCCGCCCACCG-GUGUCUGCAGGUGCAGUUAAUCA
...(((....))).-.((((((.....))))))(((--.((.((((.(--(.((((.....))))))))))))-.)))((((....))))....... ( -31.50)
>DroYak_CAF1 46405 95 - 1
CAACGGCGAUCUGG-AGGUCCGGAAAGUGGACCACACGGUGGGUGGAAACACGGGAAGUUCUUCCGCCCACCG-GUGUCUGCAGGUGCAGUUAAUCA
.(((.((.(((((.-(((((((.....)))))(((.((((((((((((..((.....))..))))))))))))-))).)).))))))).)))..... ( -44.70)
>DroAna_CAF1 47085 84 - 1
CAGCAGUGAUCGGGGCGGUUCCGAAACGGGG-----------GCUUGG--CCGGGAAGUCAGUCGUCGAACCUUCCGUCUGCAGGUGCAGUUAAUCA
..((((....(((((.(((((....((((.(-----------((((..--.....)))))..)))).)))))))))).)))).(((.......))). ( -25.00)
>consensus
CAACGGCGAUCUGG_AGGUCCGGAAAAUGGACCACA__GUGGGUGGAA__CCGGGAAGUCCUUCCGCCCACCG_GUGUCUGCAGGUGCAGUUAAUCA
.(((.((.(((((...((((((.....)))))).....(((((((((.....(((....))))))))))))..........))))))).)))..... (-25.05 = -25.92 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:17 2006