Locus 8264

Sequence ID 3R_DroMel_CAF1
Location 22,120,083 – 22,120,183
Length 100
Max. P 0.977572
window13326

overview

Window 6

Location 22,120,083 – 22,120,183
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 94.67
Mean single sequence MFE -20.07
Consensus MFE -19.53
Energy contribution -19.20
Covariance contribution -0.33
Combinations/Pair 1.11
Mean z-score -2.50
Structure conservation index 0.97
SVM decision value 1.79
SVM RNA-class probability 0.977572
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22120083 100 + 27905053
CAAACAAAACUGUCAAUUAAUAACACAAGUUUCCAGAGUGUGCGAUAUUUUUGUAUUUGAAUGGAAAUGAAUAAAUGACAGAGUUUGCCAACAAAAAAUA
(((((....((((((.(((.........(((((((....((((((.....)))))).....)))))))...))).)))))).)))))............. ( -20.20)
>DroSec_CAF1 50290 100 + 1
CAAACAAAACUGUCAAUUAAAAACACAAGUUUCCAGAGUGUGCGAUAUUUCUGUAUUUAAAUGGAAAUGAAUAAAUGACAGAGUUUGCCAACAAAAAUUA
(((((....((((((.(((.........(((((((....((((((....)).)))).....)))))))...))).)))))).)))))............. ( -18.50)
>DroSim_CAF1 42820 100 + 1
CGAACAAAACUGUCAAUUAAUAACGCAAGUUUCCAGAGUGUGCAAUAUUUUUGUAUUUAAAUGGAAAUGAAUAAAUGGCAGAGUUUGCCAACAAAAAUUA
(((((....((((((.(((...((....))(((((....((((((.....)))))).....))))).....))).)))))).)))))............. ( -21.50)
>consensus
CAAACAAAACUGUCAAUUAAUAACACAAGUUUCCAGAGUGUGCGAUAUUUUUGUAUUUAAAUGGAAAUGAAUAAAUGACAGAGUUUGCCAACAAAAAUUA
(((((....((((((.(((.........(((((((....((((((.....)))))).....)))))))...))).)))))).)))))............. (-19.53 = -19.20 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:14 2006