| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,116,048 – 22,116,145 |
| Length | 97 |
| Max. P | 0.678470 |
| Location | 22,116,048 – 22,116,145 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 80.76 |
| Mean single sequence MFE | -14.08 |
| Consensus MFE | -10.95 |
| Energy contribution | -11.29 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22116048 97 + 27905053 CCCAUCUC------UGCAUUUGGCAGUUGCUCAUUUAUUGUCAUUUCUAAUUUAUUUCAUGUGACAGUCAUUGUCCAUUUAGGAUUUAUAUGCAACAAAUAAU---- ........------(((.....)))(((((......((((((((................))))))))....((((.....))))......))))).......---- ( -17.39) >DroVir_CAF1 112396 105 + 1 UCCUUUCCCCAA--UGACUUUGACACUUGCUCAUUUAUUGUCAUUUCUAAUUUAUUUCGCUUGACAUUCAUUGUCCAUUUAGGAUUUAUACGCAAUACAUAGUACAC ............--(((((.((....((((........(((((..................)))))......((((.....))))......))))..)).))).)). ( -11.37) >DroPse_CAF1 71178 107 + 1 ACCACUUCCCGCUUCCCUUUUGGCAGUUGCUCAUUUAUUGUCAUUUCUAAUUUAUUUUACUUGACAUUCAUUGUCCAUUUAGGAUUUAUAUGCAACAAAUACUCGUA ..........(((........))).(((((........(((((....(((......)))..)))))......((((.....))))......)))))........... ( -15.90) >DroGri_CAF1 49410 96 + 1 CCAACUCCCCGA--UGACUUUGACACUUGCUCAUUUAUUGUCAUUUCUAAUUUAUUUUGCUUGACAUUCAUUGUCCAUUUAGGAUUUAUAUGCAACAC--------- ..........((--((((..(((...........)))..))))))............((.(((.(((.....((((.....))))....)))))))).--------- ( -11.40) >DroAna_CAF1 39800 101 + 1 UCUGUCAC------UGCAUUCGGCAGUUGCUCAUUUAUUGUCACUUCUAAUUUAUUUUACUUGACAUUCAUUGUCCAUUUAGGAUUUAUAUGCAACAAAUAAUCCAC ...((.((------(((.....))))).)).....................((((((...(((.(((.....((((.....))))....)))))).))))))..... ( -14.80) >DroPer_CAF1 73125 107 + 1 ACCACUUCCCGUUUCCCUUUUGGCAGUUGCUCAUUUAUUGUCAUUUCUAAUUUAUUUUACUUGACAUUCAUUGUCCAUUUAGGAUUUAUAUGCAACAAAUACUCGUA ...............((....))..(((((........(((((....(((......)))..)))))......((((.....))))......)))))........... ( -13.60) >consensus ACCACUUCCCG___UGCAUUUGGCAGUUGCUCAUUUAUUGUCAUUUCUAAUUUAUUUUACUUGACAUUCAUUGUCCAUUUAGGAUUUAUAUGCAACAAAUAAUC___ .........................(((((........(((((..................)))))......((((.....))))......)))))........... (-10.95 = -11.29 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:11 2006