Locus 8261

Sequence ID 3R_DroMel_CAF1
Location 22,114,804 – 22,114,899
Length 95
Max. P 0.955627
window13322

overview

Window 2

Location 22,114,804 – 22,114,899
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 90.88
Mean single sequence MFE -22.03
Consensus MFE -20.66
Energy contribution -20.33
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -2.33
Structure conservation index 0.94
SVM decision value 1.46
SVM RNA-class probability 0.955627
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22114804 95 - 27905053
UUUUAAUUACAAUCAAGGGGGUCGAGCUCGAGCUUAAGCUUAAGCUUAUUAAUUUUAACAGCGUGGUAAAAUUAUUACGCCUCCACUCUAUUUAA
................((((...(((((..(((....)))..))))).............((((((((....))))))))))))........... ( -25.20)
>DroSec_CAF1 37660 92 - 1
UUCUAUUUACAAUUAAGGGGGUCGAGCUCGAGCUUAAGCUUAAGCUUAUUAAUUUUAAA---UUGGUAAAAUUGUUUCGCCUCUACUCUAUUUUA
................((((((.(((((..(((....)))..)))))..((((((((..---....))))))))....))))))........... ( -21.00)
>DroSim_CAF1 37547 95 - 1
UUUUAUUUACAAUUAAGGGGGUCGAGCUCAAGCUUAAGCUUAAGCUUAUUAAUUUUAACAGCGUGGUAAAAUUGUUUCGCCUCUACUCUAUUUAA
................((((((.(((((.((((....)))).)))))..((((((((.(.....).))))))))....))))))........... ( -19.90)
>consensus
UUUUAUUUACAAUUAAGGGGGUCGAGCUCGAGCUUAAGCUUAAGCUUAUUAAUUUUAACAGCGUGGUAAAAUUGUUUCGCCUCUACUCUAUUUAA
................((((((.(((((.((((....)))).)))))..((((((((.(.....).))))))))....))))))........... (-20.66 = -20.33 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:10 2006