Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,850,090 – 2,850,180 |
Length | 90 |
Max. P | 0.529754 |
Location | 2,850,090 – 2,850,180 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.41 |
Mean single sequence MFE | -22.97 |
Consensus MFE | -14.52 |
Energy contribution | -16.22 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.19 |
Mean z-score | -1.44 |
Structure conservation index | 0.63 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2850090 90 + 27905053 GCCAUAUUUAUGCCGCAUUGUGCGCAUAAGUAGCGUCAGCAAAAAAAAAAGA---------AACUGGGCGGGGAGGGUAUCGCUUGCCAAAAUCCUUUG (((.(((((((((.((.....)))))))))))((....))............---------.....)))(((((.((((.....))))....))))).. ( -27.00) >DroSec_CAF1 125199 86 + 1 GCCAUAUUUAUGCCGCAUUGUGCGCAUAAGUAGCGUCAGCAAAAAAAA-------------AACUGGGCGGGGAGAGUAUCCCUUGCCAAAAUCCUUCG ....(((((((((.((.....)))))))))))((....))........-------------.....((((((((.....)))).))))........... ( -25.40) >DroSim_CAF1 129994 86 + 1 GCCAUAUUUAUGCCGCAUUGUGCGCAUAAGUAGCGUCAGCAAAAAAAA-------------AACUGGGCGGGGAGAGUAUCCCUUGCCAAAAUCCUUCG ....(((((((((.((.....)))))))))))((....))........-------------.....((((((((.....)))).))))........... ( -25.40) >DroEre_CAF1 128151 80 + 1 GCCAUAUCUAUGCCGCAUUGUGCGCAUAAGUAGCGUCAGCAAA----A-------------AACUGGGCG--GCAAGUAUCCCUUGCCAAAAUCCUUCG (((.((..(((((.((.....)))))))..))((....))...----.-------------.....)))(--(((((.....))))))........... ( -24.40) >DroYak_CAF1 138209 83 + 1 GCCAAAUUUAUGUCGCAUUGUGCGCAGAAGUAGCGUCAGCAAAAA--A-------------AACUGGGCGA-GAAAGUAUUCCUUGCCAAAAUCCUUUG .....((((.((.(((.....))))).)))).((....)).....--.-------------.....(((((-(.........))))))........... ( -15.60) >DroAna_CAF1 117602 99 + 1 AGAUACUUUAUGCCGCAUUGCAAGCCUUAGUAUCGUCAGCAAAAAAAAAAAAUAACGCAAAGGCAGGGCGGGGAGAAAAUCCUUUGCCAAAAUCCUUAG .((((((...(((......)))......)))))).........................((((...((((((((.....))).))))).....)))).. ( -20.00) >consensus GCCAUAUUUAUGCCGCAUUGUGCGCAUAAGUAGCGUCAGCAAAAAAAA_____________AACUGGGCGGGGAGAGUAUCCCUUGCCAAAAUCCUUCG ....((((((((((((...))).)))))))))((....))..........................(((((((........)))))))........... (-14.52 = -16.22 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:03 2006