| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,111,764 – 22,111,855 |
| Length | 91 |
| Max. P | 0.643984 |
| Location | 22,111,764 – 22,111,855 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.92 |
| Mean single sequence MFE | -25.68 |
| Consensus MFE | -18.31 |
| Energy contribution | -18.03 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22111764 91 - 27905053 GAGCCUGGACGUGUGUAGAACAACUCGUUACUGUCAGCAGCUGCCAAUGUAAACACAAGUGGCCAGCCGCAAAA-------GGAAAA--------------U-UGCUGGGCAA------- ..(((..((((.((........)).)))........((.(((((((.(((....)))..))).)))).))....-------......--------------.-..)..)))..------- ( -25.80) >DroVir_CAF1 107858 105 - 1 A----UGGACGUGUGUAGAGCAACUCGUUACUGUCAGUAGCUGCCAGUGUAAACACAAGUGGCCAGCCGCAAAA-------GGAAAG-CAAGCCCAGUAAAU-AGCUUUGAAAGAAAC-- .----..........((((((......((((((...(..((((((((((....)))...))).))))..)....-------((....-....))))))))..-.))))))........-- ( -23.60) >DroGri_CAF1 44992 106 - 1 G----UGGACGUGUGUUGAACAUCUCGUUACUGUCAGCAGCUGCCAAUGUAAACACAAGUGGCCAGCCGCAAAA-------CGAAAGUCCAGCUUAGUAAAU-AGCUGUGGAAGAAAA-- .----.((((.((((((..((((...((..(((....)))..))..)))).)))))).((((....))))....-------.....))))((((........-))))...........-- ( -28.30) >DroWil_CAF1 119071 105 - 1 GGACGCAGACGUGUGUAGAACAACUCGUUACUGUCAGCAGCUGCCAAUGUAAACACAAGUGGCCAGCCGCAAAAAAAUAGAAGAAAA--------------U-GCCUGGGCAAGAAGUUU .((((..((((.((........)).))))..)))).((.(((((((.(((....)))..))).)))).)).................--------------(-((....)))........ ( -25.60) >DroMoj_CAF1 105516 104 - 1 G----CGGACGUGUGUAGAACAACUCGUUACUGUCAGCAGCUGCCAAUGUAAACACGAGUGGCCAGCCGCAAA--------GGGAAG-CCAGCCCUGUAAAU-AGUUGUGAAAGAAAA-- .----..............((((((..((((.....((.(((((((.(((....)))..))).)))).))..(--------(((...-....))))))))..-)))))).........-- ( -26.10) >DroAna_CAF1 35537 90 - 1 GA-CUAGGACGUGUGUAGAACAACUCGUUACUGUCAGCAGCUGCCAAUGUAAACACAAGUGGUCAGCCGCAAAA-------GUAAAA--------------UUUGCUGGGCA-------- ((-(...((((.((........)).))))...))).((.(((((((.(((....)))..))).)))).(((((.-------......--------------)))))...)).-------- ( -24.70) >consensus G____UGGACGUGUGUAGAACAACUCGUUACUGUCAGCAGCUGCCAAUGUAAACACAAGUGGCCAGCCGCAAAA_______GGAAAA______________U_AGCUGGGCAAGAAA___ .......((((.(((..((.....))..))))))).((.(((((((.(((....)))..))).)))).)).................................................. (-18.31 = -18.03 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:07 2006