Locus 8257

Sequence ID 3R_DroMel_CAF1
Location 22,099,889 – 22,099,989
Length 100
Max. P 0.999150
window13317

overview

Window 7

Location 22,099,889 – 22,099,989
Length 100
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 73.55
Mean single sequence MFE -21.16
Consensus MFE -5.10
Energy contribution -8.78
Covariance contribution 3.68
Combinations/Pair 1.05
Mean z-score -2.94
Structure conservation index 0.24
SVM decision value 3.40
SVM RNA-class probability 0.999150
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22099889 100 - 27905053
CCAACACGAAAA-CAGGAGUGGAAAAAGUUAGAUGUUCAUAGG----AACCUCUUCCGCAUGUCUAACUCACAUACAGAGUUACGCACUCCACACACA--CACACAA
............-..((((((((....(..(((.((((....)----))).)))..).....))((((((.......))))))..)))))).......--....... ( -22.40)
>DroSec_CAF1 22740 98 - 1
CCAACACGAAAA-CAAGAGUGCAAAGAGUUAGAUGUUCGUAGG----AACCUCUUCCGCAUGUCUAACUCACAUACAGAGUUACGCACUCCAAGCA----CACACAA
............-.....((((...(((((((((((.((.(((----.....))).)).))))))))))).......((((.....))))...)))----)...... ( -26.30)
>DroSim_CAF1 22590 98 - 1
CCAACACGAAAA-CAAGAGUGCAAAGAGUUAGAUGUUCGUAGG----AACCUCUUCCGCAUGUCUAACUCACAUACAGAGUUACGCACUCCAAGCA----CACACAA
............-.....((((...(((((((((((.((.(((----.....))).)).))))))))))).......((((.....))))...)))----)...... ( -26.30)
>DroYak_CAF1 22198 94 - 1
CCAACACGAAAA-CAAGAGUGCA--GAGUUGAAUGU------G----AACCUCUUUCGCAUGUCUAACUCACAUACACAGUUACGCACUCCACACACAGACACACAA
............-...((((((.--((((((.((((------(----((.....)))))))...))))))((.......))...))))))................. ( -20.80)
>DroAna_CAF1 18388 99 - 1
CUAAUAGGAACAGAAAAAGUCCACAGAGUCCUCUGGUCACAAAAAAAAACUUCUC------UACUAACACACAUUCAAGUAUACAU--CCUAACCACAAGCACACAG
....(((((.........((...((((....))))...))...............------((((............))))....)--))))............... ( -10.00)
>consensus
CCAACACGAAAA_CAAGAGUGCAAAGAGUUAGAUGUUCAUAGG____AACCUCUUCCGCAUGUCUAACUCACAUACAGAGUUACGCACUCCAAACACA__CACACAA
................((((((...(((((((((((.......................)))))))))))((.......))...))))))................. ( -5.10 =  -8.78 +   3.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:04 2006