| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,096,398 – 22,096,491 |
| Length | 93 |
| Max. P | 0.534418 |
| Location | 22,096,398 – 22,096,491 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.88 |
| Mean single sequence MFE | -20.83 |
| Consensus MFE | -12.98 |
| Energy contribution | -12.57 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22096398 93 - 27905053 ----------CGAUGGUCAGG-CUCGUGUAUAAAUAUCGGAAUAAGCAUUUGAAAAUCCUUUUAAAAUUAUUUCACAACUUGCGUCUUUUCGACGUCA-AGCCAA------------ ----------.((((.....(-(....)).....))))(((((((...(((((((....))))))).)))))))....((((((((.....)))).))-))....------------ ( -18.90) >DroVir_CAF1 86815 90 - 1 -----------GCUGGUCAUG-CUCAUGUAUAAAUAUCGGAAUAACCAUUUGAAAAUCCUUUUAAAAUUAUUUCACAACUUGCGUCUUUUCGACGCCAGAG-U-------------- -----------.........(-(((.............(((((((...(((((((....))))))).))))))).......(((((.....)))))..)))-)-------------- ( -16.70) >DroGri_CAF1 25571 92 - 1 -----------GCUGUUCAUG-CCCAUGUAUAAAUAUCGGAAUAACCAUUUGAAAAUCCUUUUAGAAUUAUUUUACGACUUGCGUCUUUUGGACGCCACAG-CAC------------ -----------(((((.....-....((((.(((((..((.....)).(((((((....)))))))..)))))))))....(((((.....))))).))))-)..------------ ( -19.00) >DroWil_CAF1 95564 106 - 1 ----------UUUGCCUCAUG-CUCGUGUAUAAAUAUCGGAAUAACCAUUUGAAAAUCCUUUUAAAAUUAUUUCGCAACUUGCGUCUUUUCGACGCAAAAGCCAAGGAGACUGGCAG ----------.((((...(((-(....)))).......(((((((...(((((((....))))))).))))))))))).(((((((.....)))))))..((((.(....))))).. ( -28.70) >DroMoj_CAF1 85906 87 - 1 -----------GCUGGUCGUG-CUCAUGUAUAAAUAUCGGAAUAACCAUUUGAAAAUCCUUUUAAAAUUAUUUCA---CUUGCGUCUUUUCGACGCCAGAG-A-------------- -----------.(((((.(((-(....)))).....((((((..((((..(((((...............)))))---..)).))..)))))).)))))..-.-------------- ( -18.06) >DroPer_CAF1 52324 105 - 1 UGUUCAUGCUGGCUGGUCAUGCCUCGUGUAUAAAUAUCGGAAUAAGCAUUUGAAAAUCCUUUUAAAAUUAUUUCACAACUUGCGUCUUUUCGACGCCAGAGCCAA------------ .........(((((((.....))...............(((((((...(((((((....))))))).)))))))....((.(((((.....))))).))))))).------------ ( -23.60) >consensus ___________GCUGGUCAUG_CUCAUGUAUAAAUAUCGGAAUAACCAUUUGAAAAUCCUUUUAAAAUUAUUUCACAACUUGCGUCUUUUCGACGCCAGAG_CAA____________ ......................................(((((((...(((((((....))))))).))))))).......(((((.....)))))..................... (-12.98 = -12.57 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:03 2006