Locus 8254

Sequence ID 3R_DroMel_CAF1
Location 22,095,314 – 22,095,410
Length 96
Max. P 0.658200
window13314

overview

Window 4

Location 22,095,314 – 22,095,410
Length 96
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 84.75
Mean single sequence MFE -36.30
Consensus MFE -31.44
Energy contribution -30.95
Covariance contribution -0.49
Combinations/Pair 1.19
Mean z-score -1.57
Structure conservation index 0.87
SVM decision value 0.26
SVM RNA-class probability 0.658200
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22095314 96 + 27905053
CCUUUUAUCCGCAUUUCGUCAGCUGCUCGGGACAGGCGACAUUGCACGAUGUUGUGGGUAGGUGGUUUUUGGCCCAGUGGCUCUUU---CGCUGGGUGG-------------
((.((((((((((..(((((((.((.(((.......)))))))).))))...)))))))))).))......(((((((((.....)---))))))))..------------- ( -35.70)
>DroSec_CAF1 18124 96 + 1
CCUUUUAUCCGCAUUUCGUCAGCUGCUCGGGACAGGCGACAUUGCACGAUGUUGUGGGUAGGUGGUUUUUGGCCCAGUGGCUCAUU---CGCUGGGUGG-------------
((.((((((((((..(((((((.((.(((.......)))))))).))))...)))))))))).))......(((((((((.....)---))))))))..------------- ( -35.70)
>DroSim_CAF1 18095 96 + 1
CCUUUUAUCCGCAUUUCGUCAGCUGCUCGGGACAGGCGACAUUGCACGAUGUUGUGGGUAGGUGGUUUUUGGCCCAGUGGCUCAUU---CGCUGGGUGG-------------
((.((((((((((..(((((((.((.(((.......)))))))).))))...)))))))))).))......(((((((((.....)---))))))))..------------- ( -35.70)
>DroEre_CAF1 18392 96 + 1
CCUUUUAUCCGCAUUUCGUCAGCUGCUCGGGACAGGCGACAUUGCACGAUGUUGUGGGUAGGUGGUUUUUGGCCCAGUGGCUCUUU---CACUGGGUGU-------------
((.((((((((((..(((((((.((.(((.......)))))))).))))...)))))))))).))......(((((((((.....)---))))))))..------------- ( -36.10)
>DroYak_CAF1 17359 112 + 1
CCUUUUAUCCGCAUUUCGUCAGCUGCUCGGGACAGGCGACAUUGCACGAUGUUGUGGGUAGGUGGCCUUUGGCCCAGUGGCUCUUCCGCCACUGGGUGUUUGGUGUUUGGUG
((...((((.((.....((((.(((((((.((((.(((....)))....)))).))))))).)))).....((((((((((......))))))))))))..))))...)).. ( -46.50)
>DroAna_CAF1 13879 96 + 1
CCUUUUACCCGCAUUUCGUCAGCUGCUCCGGACAGGCAACAUUGCACGAUGUCGUGGGUAGGUUCAUUUCAGUUCACUU--CUGUU---CGGUGAAGGG-----------UC
(((((((((.(((..........)))...(((((((..(((((....))))).(((..(.((......)).)..))).)--)))))---))))))))))-----------.. ( -28.10)
>consensus
CCUUUUAUCCGCAUUUCGUCAGCUGCUCGGGACAGGCGACAUUGCACGAUGUUGUGGGUAGGUGGUUUUUGGCCCAGUGGCUCUUU___CGCUGGGUGG_____________
((.((((((((((...((((..((((....).)))(((....)))..)))).)))))))))).))......((((((((..........))))))))............... (-31.44 = -30.95 +  -0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:01 2006