Locus 8251

Sequence ID 3R_DroMel_CAF1
Location 22,078,822 – 22,078,913
Length 91
Max. P 0.813123
window13305

overview

Window 5

Location 22,078,822 – 22,078,913
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.19
Mean single sequence MFE -25.95
Consensus MFE -20.98
Energy contribution -21.87
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -1.39
Structure conservation index 0.81
SVM decision value 0.65
SVM RNA-class probability 0.813123
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22078822 91 - 27905053
-----ACCUGCUGGCACAAAGAUUGUCCACAAAAGUGGAAUUAAUUGUAUUUGCAUAGGAUGUAAACAUCAUCACGU-UGCCGGCAGGAUCUUGUCC-----------------------
-----.(((((((((((((......(((((....))))).....))))..........((((....)))).......-.))))))))).........----------------------- ( -31.60)
>DroVir_CAF1 58991 111 - 1
------GCUGCA-GCACAAAGAUUGUCCACAA-AGUGGAAUUAAUUGUAUUUGCAUAGCAUGUAAACAUCAUCACGU-UGUCGGCAGGAUCUCGCUAGUCGUCCGCACCAAGCCCAACUG
------((((((-((((((......(((((..-.))))).....)))).(((((((...))))))).........))-)).)))).((((..(....)..))))((.....))....... ( -24.90)
>DroPse_CAF1 29428 96 - 1
GUGCUAGCUGCUGGCACAAAGAUUGUCCACAAAAGUGGAAUUAAUUGUAUUUGCAUAGCAUGUAAACAUCAUCACGU-UGCCGGCAGGAUCUCGCCC-----------------------
..((.((((((((((((((......(((((....))))).....)))).(((((((...)))))))...........-.))))))))...)).))..----------------------- ( -27.70)
>DroGri_CAF1 2022 91 - 1
------UCUGCU-GCACAAAGAUUGUCCACAU-AGUGGAAUUAAUUGUAUUUGCAUAGCAUGUAAACAUCAUCACUUUUGCUGUCAGGGUUCCGCUUG---------------------G
------(((((.-(((.((((....(((((..-.)))))..........(((((((...)))))))........))))))).).))))..........---------------------. ( -16.10)
>DroWil_CAF1 74272 95 - 1
-UGAUGGUGCCUGGGACAAAGAUUGUCCACAAAAGUGGAAUUAAUUGUAUUUGCAUAGCAUGUAAACACCAUCACGU-UGCCGGCAGGAUCUCUGGC-----------------------
-((((((((......((((......(((((....))))).....)))).(((((((...)))))))))))))))...-.(((((.((...)))))))----------------------- ( -27.70)
>DroPer_CAF1 31167 96 - 1
GUGCUAGCUGCUGGCACAAAGAUUGUCCACAAAAGUGGAAUUAAUUGUAUUUGCAUAGCAUGUAAACAUCAUCACGU-UGCCGGCAGGAUCUCGCCC-----------------------
..((.((((((((((((((......(((((....))))).....)))).(((((((...)))))))...........-.))))))))...)).))..----------------------- ( -27.70)
>consensus
_____AGCUGCUGGCACAAAGAUUGUCCACAAAAGUGGAAUUAAUUGUAUUUGCAUAGCAUGUAAACAUCAUCACGU_UGCCGGCAGGAUCUCGCCC_______________________
.......((((((((((((......(((((....))))).....)))).(((((((...))))))).............))))))))................................. (-20.98 = -21.87 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:51 2006