Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,844,284 – 2,844,381 |
Length | 97 |
Max. P | 0.636769 |
Location | 2,844,284 – 2,844,381 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 87.13 |
Mean single sequence MFE | -14.23 |
Consensus MFE | -12.32 |
Energy contribution | -12.35 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.87 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2844284 97 + 27905053 UCGUCUAAAUUUAUGCGGCUUUGCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA---AGCAACCACUCACA ..(.((((((((((..(((...))))))))))))))..(((.(((........))).))).......................---.............. ( -13.00) >DroSim_CAF1 124299 97 + 1 UCGUCUAAAUUUAUGCGGCUUUGCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA---AGCAACCACACACA ..(.((((((((((..(((...))))))))))))))..(((.(((........))).))).......................---.............. ( -13.00) >DroEre_CAF1 122645 95 + 1 UCGUCUAAAUUUAUGCGGCUUUCCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA---AGCAACCACACA-- ..(.(((((((((((.((....))))))))))))))..(((.(((........))).))).......................---............-- ( -15.10) >DroYak_CAF1 131832 97 + 1 UCGUCUAAAUUUAUGCGGCUUUCCCAUAAAUUUACCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA---AGCAACCACACACA .....((((((((((.((....))))))))))))....(((.(((........))).))).......................---.............. ( -11.50) >DroMoj_CAF1 187450 80 + 1 ACGUCUAAAUUUAUGCGGCUUUGCCAUAAAUUUGGCAGGCUGUAAGGAUAUCAUUAAAGCUCACCAACACACACACACAC-------------------- ........(((..((((((((.((((......))))))))))))..)))...............................-------------------- ( -17.80) >DroAna_CAF1 112765 100 + 1 UCGUCUAAAUUUAUGCGGCUUCGCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACACUUACUAAAUAAACACUCACA ..(.(((((((((((((....)).))))))))))))..(((.(((........))).)))........................................ ( -15.00) >consensus UCGUCUAAAUUUAUGCGGCUUUGCCAUAAAUUUAGCAGGCUAUAAGGAUAUCAUUAAAGCGCAACCACACACCCACACCCUCA___AGCAACCACACACA ..(.(((((((((((.(......)))))))))))))..(((.(((........))).)))........................................ (-12.32 = -12.35 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:02 2006