Locus 8248

Sequence ID 3R_DroMel_CAF1
Location 22,074,833 – 22,074,953
Length 120
Max. P 0.726694
window13296

overview

Window 6

Location 22,074,833 – 22,074,953
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.33
Mean single sequence MFE -26.12
Consensus MFE -23.80
Energy contribution -23.88
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.32
Structure conservation index 0.91
SVM decision value 0.41
SVM RNA-class probability 0.726694
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22074833 120 + 27905053
CACAAUUUUGCACUAUUUUGCACACAGUUUUGUUCCAUUUCGCAAUCUGUAAUGGAAAAUCUAAAUGAUGAAAACCUUUUGUGUGUUACGUCGCAGUGCUAGAAACUUUAAUUGCACAGU
........(((((......((((((((((((.(((((((.((.....)).))))))).(((.....))).)))))....)))))))...)).)))((((..............))))... ( -23.84)
>DroSec_CAF1 66860 120 + 1
CACAGUUUUGCACUAUUUUGCACACAGUUUUGUUCCAUUUUGCAAUCUGUAAUGGAAAAUCUAAAUGAUGAAAACCUUUUGUGUGUUACGUCGCAGUGCUAGAAACUUUAAUUGCACAGU
...(((((((((((.....((((((((((((.((((((..(((.....))))))))).(((.....))).)))))....)))))))........)))))..))))))............. ( -25.42)
>DroSim_CAF1 60299 120 + 1
CACAGUUUUGCACUGUUUUGCACACAGUUUUGUUCCAUUUUGCAAUCUGUAAUGGAAAAUCUAAAUGAUGAAAACCUUUUGUGUGUUACGUCGCAGUGCUAGAAACUUUAAUUGCACAGU
...(((((((((((((...((((((((((((.((((((..(((.....))))))))).(((.....))).)))))....)))))))......)))))))..))))))............. ( -30.40)
>DroEre_CAF1 61486 120 + 1
CACAGCUUUGCACUAUUUUGCACACAGUUUUGUUCCAUUUUGCAAUCUGUAAUGGAAAAUCUAAAUGAUGAAAACCUUUUGUGUGUUACGUCGCAGUGUUAGAAACUUUAAUUGCACAGC
....(((.((((.......((((((((((((.((((((..(((.....))))))))).(((.....))).)))))....)))))))(((......)))..............)))).))) ( -23.90)
>DroYak_CAF1 69355 120 + 1
CACAGUUUUGCACUAUUUUGCACACAGUUUUGUUCCAUUUUGCAAUCUGUAAUGGAAAAUCUAAAUGAUGAAAACCUUUUGUGUGCUACAUCGCAGUGCUAGAAACUUUAAUUGCACAGU
...(((((((((((.....((((((((((((.((((((..(((.....))))))))).(((.....))).)))))....)))))))........)))))..))))))............. ( -27.02)
>consensus
CACAGUUUUGCACUAUUUUGCACACAGUUUUGUUCCAUUUUGCAAUCUGUAAUGGAAAAUCUAAAUGAUGAAAACCUUUUGUGUGUUACGUCGCAGUGCUAGAAACUUUAAUUGCACAGU
...(((((((((((.....((((((((((((.(((((((..((.....))))))))).(((.....))).)))))....)))))))........)))))..))))))............. (-23.80 = -23.88 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:43 2006