Locus 8247

Sequence ID 3R_DroMel_CAF1
Location 22,074,167 – 22,074,287
Length 120
Max. P 0.956386
window13295

overview

Window 5

Location 22,074,167 – 22,074,287
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.08
Mean single sequence MFE -35.36
Consensus MFE -28.54
Energy contribution -29.42
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -2.09
Structure conservation index 0.81
SVM decision value 1.47
SVM RNA-class probability 0.956386
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22074167 120 - 27905053
UACCCAGUACACUUUACACUUUGCUCGCACUCGAUGGCUGUGCGUAUGCUUGUAGCUAUUACGAAAGCAUUCUGCGAGCACGUGAAGGCAAAAAGGCACGAAAUGUACAGUAAUCACAAC
......(((((((((((....((((((((...((..(((...((((.((.....))...))))..)))..)))))))))).))))))((......))......)))))............ ( -34.70)
>DroSec_CAF1 66194 120 - 1
UACCCAGUACACUUUACACUUUGCUCGCACUCGAUGGCUGUGCGUAUGCUUAUAGCUAUUACGAAAGCAUUCUGCGAGCACGUGAAGGCAAAAAGGCACGAAAUGUACAGUAAUCACUAC
......(((((((((((....((((((((...((((((((((.(....).)))))))))).(....).....)))))))).))))))((......))......)))))............ ( -36.10)
>DroSim_CAF1 59629 120 - 1
UACCCAGUACACUUUACACUUUGCUCGCACUCGAUGGCUGUGCGUAUGCUUAUAGCUAUUACGAAAGCAUUCUGCGAGCACGUGAAGGCAUAAAGGCACGAAAUGUACAGUAAUCACUAC
......(((((((((((....((((((((...((((((((((.(....).)))))))))).(....).....)))))))).))))))((......))......)))))............ ( -36.10)
>DroEre_CAF1 60820 120 - 1
UAGCCCGAACACUUUACACUUUGCUCGCACUCGAUGGCUGUGCGUAUGCGUAGAGCUAUUACGAAAUCAUUCUGCGAGCACGUGAAGGCAGAAAGGCACGAAAUGUACAGUAGUCACUUG
..(((......((((((....((((((((...(((((((.((((....)))).)))))))..(((....))))))))))).)))))).......)))....................... ( -37.22)
>DroYak_CAF1 68687 120 - 1
UACCCCGAACACUUUACACUUUGCUCGCACUCGAUGGCUGUGCGUAUGCAUAGACCUAUUACGAAAUCAUUCUGCGAGCACGUGAAGCUAGAACGGCACGAAAUGUACAGUAAUCACUUG
......((..(((.((((...((((((((......((((((((....)))))).))......(((....)))))))))))((((..(......)..))))...)))).)))..))..... ( -32.70)
>consensus
UACCCAGUACACUUUACACUUUGCUCGCACUCGAUGGCUGUGCGUAUGCUUAUAGCUAUUACGAAAGCAUUCUGCGAGCACGUGAAGGCAAAAAGGCACGAAAUGUACAGUAAUCACUAC
......(((((((((((....((((((((...((((((((((.(....).))))))))))..(((....))))))))))).))))))((......))......)))))............ (-28.54 = -29.42 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:42 2006