Locus 8244

Sequence ID 3R_DroMel_CAF1
Location 22,072,151 – 22,072,271
Length 120
Max. P 0.890336
window13290

overview

Window 0

Location 22,072,151 – 22,072,271
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.58
Mean single sequence MFE -29.33
Consensus MFE -22.74
Energy contribution -24.58
Covariance contribution 1.84
Combinations/Pair 1.15
Mean z-score -2.04
Structure conservation index 0.78
SVM decision value 0.96
SVM RNA-class probability 0.890336
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22072151 120 + 27905053
AACUGUGCGACUGGCCCACAAAAGGCAACAGUGAAAUACACACAUCAAAUCAAAUUAAGCUUUGUGAAACGAGAAGCGGCUAACAGAAAUGGCCACUUUUCUGGCUUAUGUCAUCAACAA
...(((..(((.((((((((((.(....).(((.....)))...................))))))....((((((.(((((.......))))).)))))).))))...)))....))). ( -31.40)
>DroSec_CAF1 64219 120 + 1
CACUGUGCGACUGGCCCACAAAAGGCAACAGUGAAAUACACACAUCAAAUCAAAUUAGUCUUUGUGAAACGAGAAGCGGCUAACAGAAAUGGCCACUUUUCUGGCUUAUAUCAUCCACGA
...((((.((..((((((((((.(....).(((.....)))...................))))))....((((((.(((((.......))))).)))))).)))).......)))))). ( -29.10)
>DroSim_CAF1 57198 120 + 1
AACUGUGCGACUGGCCCACAAAAGGCAACAGUGAAAUACACACAUCAAAUCAAAUUAGUCUUUGUGAAACGAGAAGCGGCUAACAGAAAUGGCCACUUUUCUGGCUUAUGUCAUCCACGA
...((((.(((.((((((((((.(....).(((.....)))...................))))))....((((((.(((((.......))))).)))))).))))...)))...)))). ( -32.70)
>DroEre_CAF1 58734 120 + 1
AUCUGUCGGACUGGCCCACGAAAGCCAACAACGAAAUACACACAUCAAAUCAAAUUAGGCUUUGUGAAUCGAGAAACGGCCAACAGAAAUGGACACUUUCGUGGCUUAUGUCAUCCACGA
...((((....((((((((.((((((...............................)))))))))....(.....)))))).((....))))))...((((((..........)))))) ( -26.28)
>DroYak_CAF1 66671 120 + 1
AAAUGUGCGACUGGCCCACAAAAGCCAACAGCGAAAUACACACAUCAAAUCAAAUUAAGCUUUGUGAAACGAAAAACGGCUAACAGAAAUGGCCACUUUGCGGGCUUAUGUCAUCCACGA
...((((.(((.(((((.((((.((((...((..........................))(((((....((.....))....)))))..))))...)))).)))))...)))...)))). ( -27.17)
>consensus
AACUGUGCGACUGGCCCACAAAAGGCAACAGUGAAAUACACACAUCAAAUCAAAUUAGGCUUUGUGAAACGAGAAGCGGCUAACAGAAAUGGCCACUUUUCUGGCUUAUGUCAUCCACGA
...((((.(((.((((((((((.(((.....(((...............))).....)))))))))....((((((.(((((.......))))).)))))).))))...)))...)))). (-22.74 = -24.58 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:37 2006