Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,071,515 – 22,071,632 |
Length | 117 |
Max. P | 0.516171 |
Location | 22,071,515 – 22,071,632 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.66 |
Mean single sequence MFE | -22.77 |
Consensus MFE | -15.18 |
Energy contribution | -14.90 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.22 |
Mean z-score | -1.66 |
Structure conservation index | 0.67 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22071515 117 + 27905053 GAAGUAA-AAAA-UUCCAGUUUAAAUUAAACGGAAUUUCCCAUUCGGAAUUCUCGUAAAUAACAAAUAAUUACGAUUAAACGAAGUAGCAAACAUUGGACACUUCUUCGAAGUUGUGAA (((((..-.(((-((((.(((((...)))))))))))).(((((((......((((((.((.....)).)))))).....))))((.....))..)))..))))).............. ( -20.40) >DroSec_CAF1 63584 117 + 1 AAAGAAA-AGAA-AUCCAGCUUAAAUUAAAUGGAAAUUCCCAUUCGAGAUUCCAGUGAAUAACAAACAAUUACGAUUAAUCGAAGUAGCAAACAUUGGACACUUCUUCGAAGUUAGGAA .......-....-.((((((((......(((((......)))))(((((.((((((((((........))).(((....)))..........)))))))....)).)))))))).))). ( -20.30) >DroSim_CAF1 56562 117 + 1 AAAUAAA-AAAA-UUCCAGCUUAAAUGUAGUGGAAUUUCCCAUUCGAGAUUCCAGUGAAUAACAAACAAUUACGAUUAAACGAAGUAGCAAACAUUGGACACUUCUUCGAAGUUGUGAA .......-....-(((((((((...((((((((((((((......)))))))).((.....)).....))))))......(((((.((.............)).))))))))))).))) ( -24.02) >DroEre_CAF1 58097 118 + 1 AAAGAAA-AAAAUUUCCAGCUUAGGUUAAAUGGAAUUUUCCAUUAGGGAUUCCCAUAAAAACCAAAGAAUAACGAUUAGGCAAAGCAGCUAGCAUUGGACACUUCUUCGAAGUUGAGAU .......-......((((((((.((((.((((((....)))))).(((...))).....)))).........(((..((((((.((.....)).)))....)))..))))))))).)). ( -23.70) >DroYak_CAF1 66033 119 + 1 AGAGAAAAAAAAUUUCCAGCUUAAAUUAAAUGGAAUUUCCCAUUCGGGAUUCCCAAUAAAUGCUAAGAAUUACGAUUAGGCGAAGUAGCCAACAUUGGACACUUCUUCGAAGUUGUGAA .(.((((.....)))))(((...........((((..((((....))))))))........))).....((((((((.((.(((((..(((....)))..))))).))..)))))))). ( -25.41) >consensus AAAGAAA_AAAA_UUCCAGCUUAAAUUAAAUGGAAUUUCCCAUUCGGGAUUCCCGUAAAUAACAAACAAUUACGAUUAAACGAAGUAGCAAACAUUGGACACUUCUUCGAAGUUGUGAA ..............((((((((.........((((((((......))))))))...........................(((((.((.............)).))))))))))).)). (-15.18 = -14.90 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:36 2006