Locus 8242

Sequence ID 3R_DroMel_CAF1
Location 22,071,197 – 22,071,317
Length 120
Max. P 0.527054
window13288

overview

Window 8

Location 22,071,197 – 22,071,317
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.83
Mean single sequence MFE -24.68
Consensus MFE -22.70
Energy contribution -22.92
Covariance contribution 0.22
Combinations/Pair 1.08
Mean z-score -1.15
Structure conservation index 0.92
SVM decision value -0.01
SVM RNA-class probability 0.527054
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22071197 120 + 27905053
AUUUUGGAGGCGUGUUAUGUGCGGAUUUUAAUUAUUUAAAAUGGAAAUUUAUUUUUGAUUCAAGUCCACAAUAACUGAUUGUAUUCGCUUAAGAAACAUCAAUAAGCCGAAACAUGUUUG
.......(((((((((.((.((((((((.(((((....((((....)))).....))))).))))))........((((.((.(((......)))))))))....)))).))))))))). ( -25.60)
>DroSec_CAF1 63266 120 + 1
AUUUUGGAGGCGUGUUAUGUGCGGAUUUUAAUUAUUUAAAAUGCAAAUUUAUUUUUGAUUCAAGUCCACAAUAACUGAUUGUAUUCGCUUAAGAAACAGCAAUAAGCCAAAACAUGUUUG
.......(((((((((.((.((((((((.(((((...((((((......))))))))))).))))))(((((.....)))))....(((........))).....)))).))))))))). ( -24.80)
>DroSim_CAF1 56244 120 + 1
AUUUUGGAGGCGUGUCAUGUGCGGAUUUUAAUUAUUUAAAAUGCAAAUUUAUUUUUGAUUCAAGUCCACAAUAACUGAUUGUAUUCGCUUAAGAAACAGCAAUAAGCCAAAACAUGUUUG
.......((((((((..((.((((((((.(((((...((((((......))))))))))).))))))(((((.....)))))....(((........))).....))))..)))))))). ( -23.30)
>DroEre_CAF1 57780 120 + 1
AUUUCGGAGGCGUGUUAUGUGCGGAUUUUAAUUAUUUAAAAUGCAAAUUUAUUUUUGAUUCAAGUCCACAAUAACUGAUUGUAUUCGCUUAAGAAACGGCAAUAAGCUAAAACAUGUUUG
.......(((((((((.((.((((((((.(((((...((((((......))))))))))).))))))..........(((((.(((......)))...)))))..)))).))))))))). ( -23.40)
>DroYak_CAF1 65715 120 + 1
AUUUCGGAGGCGUGUUAUGUGCGGAUUUUAAUUAUUUAAAAUGCAAAUUUUUUUUUGAUUCAAGUCCACAAUAACUGAUUGUAUUCGCUUAAAAAACAGCAAUAAGCCAAAACAUGUUUG
.......(((((((((.((.((((((((.(((((...(((((....)))))....))))).))))))(((((.....)))))....(((........))).....)))).))))))))). ( -26.30)
>consensus
AUUUUGGAGGCGUGUUAUGUGCGGAUUUUAAUUAUUUAAAAUGCAAAUUUAUUUUUGAUUCAAGUCCACAAUAACUGAUUGUAUUCGCUUAAGAAACAGCAAUAAGCCAAAACAUGUUUG
.......(((((((((.((.((((((((.(((((....((((....)))).....))))).))))))(((((.....)))))....(((........))).....)))).))))))))). (-22.70 = -22.92 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:35 2006