Locus 8241

Sequence ID 3R_DroMel_CAF1
Location 22,070,757 – 22,070,871
Length 114
Max. P 0.712330
window13287

overview

Window 7

Location 22,070,757 – 22,070,871
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.27
Mean single sequence MFE -25.90
Consensus MFE -21.08
Energy contribution -21.88
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.81
SVM decision value 0.38
SVM RNA-class probability 0.712330
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22070757 114 - 27905053
AAUCUAUAGGUACACUUCCACUUUCCAUGGGAUUUGUAAAAUCAAAUGAUAUCGGCACUU------AUAGAACCCUAAAAAAAAGGGCUCAAUGCUCCCAGCACGCGCGCCUCUCAUUUG
..........((((..(((.(.......))))..))))....(((((((....(((....------...((.((((.......)))).))..(((.....))).....)))..))))))) ( -24.40)
>DroSec_CAF1 62809 110 - 1
AAUCUAUAGGUACACUUCCACUUUCCAUGGGAUUUGUAAAAUCAAAUGAUAUUGGCACUU------AUAGACCCCUAAA--AAAGGGCUCAAUGCUCCCAGCACGCGCG--UCUCAUUUG
..........((((..(((.(.......))))..))))....(((((((...((((....------...((.((((...--..)))).))..(((.....))).)).))--..))))))) ( -23.00)
>DroSim_CAF1 55795 112 - 1
AAUCUAUAGGUACACUUCCACUUUCCAUGGGAUUUGUAAAAUCAAAUGAUAUUGGCACUU------AUAGACCCCUAAA--AAAGGGCUCAAUGCUCCCAGCACGCGCGCCUCUCAUUUG
..........((((..(((.(.......))))..))))....(((((((....(((....------...((.((((...--..)))).))..(((.....))).....)))..))))))) ( -25.40)
>DroEre_CAF1 57320 112 - 1
AAUCCAUAGGUACACUUCCACUUUCCAUGGGAUUUGUAAAAUCAAAUGAUAUUGGCAUUU------AUAGACGCCUAAA--AAAGGGCUCAAUGCUCCCAGCACGCGCGCCUCUCAUUUG
..........((((..(((.(.......))))..))))....(((((((....(((....------...((.((((...--...))))))..(((.....))).....)))..))))))) ( -25.10)
>DroYak_CAF1 65251 118 - 1
AAUCCAUAGGUACACUUCCACUUUCCAUGGGAUUUGUAAAAUCAAAUGAUAUUGGCAUUUACGAGUAUAGACGCCUAAA--AAAGGGCUCAAUGCUCCCAGCACGCGCGCCUCUCAUUUG
..........((((..(((.(.......))))..))))....(((((((....(((......((((((.((.((((...--...)))))).))))))...((....)))))..))))))) ( -31.60)
>consensus
AAUCUAUAGGUACACUUCCACUUUCCAUGGGAUUUGUAAAAUCAAAUGAUAUUGGCACUU______AUAGACCCCUAAA__AAAGGGCUCAAUGCUCCCAGCACGCGCGCCUCUCAUUUG
..........((((..(((.(.......))))..))))....(((((((....(((.............((.((((.......)))).))..(((.....))).....)))..))))))) (-21.08 = -21.88 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:34 2006