Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,843,134 – 2,843,230 |
Length | 96 |
Max. P | 0.650655 |
Location | 2,843,134 – 2,843,230 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 95.21 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -23.36 |
Energy contribution | -23.04 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.13 |
Mean z-score | -1.40 |
Structure conservation index | 0.84 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2843134 96 + 27905053 AAGUACUACUUUAAGAAUUUACAUGCGGCAAUUGCAGCCAGCGGCAACGGCGGUGUAAACUCCUGGAAACGGAGAAUCGGGACGUAGGAGCUAACA .(((.((((.((..((.((((((((((((.......)))..((....)))).)))))))((((.(....)))))..))..)).))))..))).... ( -30.00) >DroSec_CAF1 118380 96 + 1 AAGUACUACUUUAAGAAUUUACAUGCGGCAAUUGCAGCCAGCGGCAACGGCGGCGUAAACUGCUGGAAACGGAGAAUCGGAACGUAGGAGCUAACA .(((.((((.((..((.(((((.((((.....))))(((..((....))..))))))))((.(((....)))))..))..)).))))..))).... ( -26.50) >DroSim_CAF1 123139 96 + 1 AAGUACUACUUUAAGAAUUUACAUGCGGCAAUUGCAGCCAGCGGCAACGGCGGCGUAAACUGCUGGAAACGGAGAAUCGGGACGUAGGAGCUAACA .(((.((((.((..((.(((((.((((.....))))(((..((....))..))))))))((.(((....)))))..))..)).))))..))).... ( -26.90) >DroEre_CAF1 121546 96 + 1 AAGUACUACUUUAAGAAUUUACAUGCGGCAAUUGCAGCCAGCGGCAACGGCGGCGUGAACUGCUGCAAACGGAGAAUCGGGACGUAGGAGCAAGCA ..((.((((.((..((.(((...(((((((.(..(.(((..((....))..))))..)..))))))).....))).))..)).))))..))..... ( -27.70) >DroYak_CAF1 130751 96 + 1 AAGUACUACUUUAAGAAUUUACAUGCGGCAAUUGCAGCCAGCGGCAACGGGGGUGUAAACUGCUGCAAACGGAGAAUCGGGACGGGGGAGCUAGCA .(((.(..((((..((.(((...(((((((.(((((.((..((....)).)).)))))..))))))).....))).))..)).))..).))).... ( -27.30) >consensus AAGUACUACUUUAAGAAUUUACAUGCGGCAAUUGCAGCCAGCGGCAACGGCGGCGUAAACUGCUGGAAACGGAGAAUCGGGACGUAGGAGCUAACA .(((.((((.((..((.(((((.((((.....))))(((..((....))..))))))))((.(((....)))))..))..)).))))..))).... (-23.36 = -23.04 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:01 2006