Locus 8239

Sequence ID 3R_DroMel_CAF1
Location 22,069,256 – 22,069,376
Length 120
Max. P 0.822642
window13284

overview

Window 4

Location 22,069,256 – 22,069,376
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.41
Mean single sequence MFE -35.68
Consensus MFE -32.92
Energy contribution -33.08
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.28
Structure conservation index 0.92
SVM decision value 0.69
SVM RNA-class probability 0.822642
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22069256 120 + 27905053
AUGCCAAACACAACGAACUAAACGCAAGUGUAGACUUCCACUUCCGGCGACGAUGCACUCACUGCCCAUUGAGGGUCACUCAACGGCGACCUUUGCUCUUUGGCAGGUCAACUGUCGCCA
.................(((.((....)).)))............(((((((...........(((..(((((.....))))).)))(((((..(((....))))))))...))))))). ( -36.30)
>DroSec_CAF1 61291 115 + 1
AUGCCAAACAUGCCGAACUAAACGCA-GUGUAGACUUCCACUUCCGGCGACGAUGCA----CUGCCCAUUGAGGGUCACUCAACGGCGACCUUUGCUCUUUGGCAGGUCAACUGUCGCCA
.(((((((...((..........(((-(((((.....((......))......))))----)))).....(((((((.((....)).)))))))))..)))))))(((........))). ( -35.30)
>DroSim_CAF1 54277 116 + 1
AUGCCAAACAUGCCGAACUAAACGCAAGUGUAGACUUCCACUUCCGGCGACGAUGCA----CUGCCCAUUGAGGGUCACUCAACGGCGACCUUUGCUCUUUGGCAGGUCAACUGUCGCCA
.................(((.((....)).)))............(((((((.....----..(((..(((((.....))))).)))(((((..(((....))))))))...))))))). ( -36.30)
>DroEre_CAF1 55795 116 + 1
AUGCCAAACACGCCGAGCUGAACGCAAGUGUAGACUUCCACUUCCGGCGACGAUGCA----CUGCCCAUUGAGGGUCACUCAACGGCGACCUUUGCUCUUUGACAGGUCAACUGUCGCCA
..............((((((.((....)).))).)))........(((((((.....----..(((..(((((.....))))).)))(((((...(.....)..)))))...))))))). ( -35.20)
>DroYak_CAF1 63740 116 + 1
AUGCCAAACACGCCGAACUGUACGCAAGUGUAGACUUCCACUUCCGGCGACGAUGCA----CUGCCCAUUGAGGGUCACUCAACGGCGACCUUUGCUCUUUGACAGGUCAACUGUCGCCA
.................((((((....))))))............(((((((.....----..(((..(((((.....))))).)))(((((...(.....)..)))))...))))))). ( -35.30)
>consensus
AUGCCAAACACGCCGAACUAAACGCAAGUGUAGACUUCCACUUCCGGCGACGAUGCA____CUGCCCAUUGAGGGUCACUCAACGGCGACCUUUGCUCUUUGGCAGGUCAACUGUCGCCA
.................(((.((....)).)))............(((((((...........(((..(((((.....))))).)))(((((..((......)))))))...))))))). (-32.92 = -33.08 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:31 2006