Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,067,791 – 22,067,894 |
Length | 103 |
Max. P | 0.865905 |
Location | 22,067,791 – 22,067,894 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.08 |
Mean single sequence MFE | -33.76 |
Consensus MFE | -25.42 |
Energy contribution | -26.22 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.75 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22067791 103 - 27905053 AACAUGACCAGCAUG-----------C------UCCCCCGGUGAGCACGUGUCGUGCGCUUGACCACAAAAUGUUGCAUGUUUUCCAGCUGCAACAGUAAAUUCAAUUGCUGCCACAUGA ..((((..(((((((-----------(------(((....).))))).((((((......))).)))....(((((((.((......)))))))))...........)))))...)))). ( -30.30) >DroSec_CAF1 59787 120 - 1 AACAUGACCAACAAGAGCAGCAAAUGCAACACAUCCCCCGGUGAGCACGUGUCGUGCGCUUGACCACAAAAUGUUGCAUGUUUUCCAGCUGCAACAGUAAAUUCAAUUGCUGCCACAUGA ..((((..........(((((..((((((((((((....)))).(((((...)))))..............))))))))........)))))..((((((......))))))...)))). ( -33.90) >DroSim_CAF1 52808 120 - 1 AACAUGACCAACAAGAGGAGCAAAUGCAACACAUCCCCCGGUGAGCACGUGUCGUGCGCUUGACCACAAAAUGUUGCAUGUUUUCCAGCUGCAACAGUAAAUUCAAUUGCUGCCACAUGA ..((((..........((((...((((((((((((....)))).(((((...)))))..............))))))))...)))).((.((((..(......)..)))).))..)))). ( -32.30) >DroEre_CAF1 54298 120 - 1 AACAUGACCAGCCAGAGCAACACAUGCGACACAUCCCCCGGUGAGCACGUGUCGUGCGCUUGACCACAAAAUGUUGCAUGUUUUCCAGCUGCAACAGUAAAUUCAAUUGCUGCCACAUGA ..((((..((((..(((....((((((((((((((....)))).(((((...)))))..............)))))))))).)))..))))...((((((......))))))...)))). ( -35.60) >DroYak_CAF1 62241 120 - 1 AACAUGGUCAGCAAGAGCAACACAUGCAGCACAUCCCCCGGUGAGCACGUGUCGUGCGCUUGACCACAAAAUGUUGCAUGUUUUCCAGCUGCAACAGUAAAUUCAAUUGCUGCCACAUGA ..(((((.((((((((((.(((((((..((.((((....)))).)).))))).))..))))..........(((((((.((......)))))))))..........)))))).).)))). ( -36.70) >consensus AACAUGACCAGCAAGAGCAACAAAUGCAACACAUCCCCCGGUGAGCACGUGUCGUGCGCUUGACCACAAAAUGUUGCAUGUUUUCCAGCUGCAACAGUAAAUUCAAUUGCUGCCACAUGA ..((((..((((((.........................(((.((((((...)))))...).)))......(((((((.((......)))))))))..........))))))...)))). (-25.42 = -26.22 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:30 2006