Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 22,064,997 – 22,065,113 |
Length | 116 |
Max. P | 0.903746 |
Location | 22,064,997 – 22,065,113 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 86.59 |
Mean single sequence MFE | -24.74 |
Consensus MFE | -16.86 |
Energy contribution | -17.22 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -2.70 |
Structure conservation index | 0.68 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22064997 116 - 27905053 AGCGCUUACAAAGCCGCCAUAGUGGCGCCCCAAAAAGGGAGCUGCAAAUA---AAAAAAUAAGAAAACAAAGUUUCAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA .((((.......(((((....)))))(((((.....))).)).)).....---.........((((......)))).)).(((((((((...(((....)))...)))))))))..... ( -28.70) >DroSec_CAF1 56978 111 - 1 GGCGCUUACAAAGUCGCCAUAGUGGCGCCCCAAAA--GGAGCUGCAAAUA---AAAAAAUAAG---ACAAAGUUUUAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA ((((((.....)).))))...(..((.((......--)).))..).....---......((((---((...))))))...(((((((((...(((....)))...)))))))))..... ( -25.40) >DroSim_CAF1 49980 111 - 1 GGCGCUUACAAAGUCGCCAUAGUGGCGCCCCAAAA--GGAGCUGCAAAUA---AAAAAAUAAG---ACAAAGUUUUAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA ((((((.....)).))))...(..((.((......--)).))..).....---......((((---((...))))))...(((((((((...(((....)))...)))))))))..... ( -25.40) >DroEre_CAF1 51565 112 - 1 AGCGC-UACAAUGCCGACAUAGUGGCGCCCAAAAA--GGAGCUACCAACC---AAAAAAUAAGAAAA-AAAGUUUCGGCAACUUGUAUAAAUAAAAAUGUUUUGGUACACAAGUGAUAA .((((-(((.(((....))).)))))))((.....--)).(((....(((---((((.....((((.-....))))(....).................))))))).....)))..... ( -22.30) >DroYak_CAF1 59396 110 - 1 -------ACAAUGUAGUCACUAUGGCGCCCAAAAA--GGAGCUGCCAAUAAAGAAAAAAUAAGAAAACAAAGUUUGAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA -------........((((((.((((((((.....--)).)).))))...........(((..((((((..(((((.((.....)).))))).....))))))..)))...)))))).. ( -21.90) >consensus AGCGCUUACAAAGUCGCCAUAGUGGCGCCCCAAAA__GGAGCUGCAAAUA___AAAAAAUAAGAAAACAAAGUUUCAGCAACUUGUAUAAAUAAAAAUGUUUUGGUAUACGAGUGAUAA .((....((...(((((....)))))((((.......)).)).............................))....)).(((((((((...(((....)))...)))))))))..... (-16.86 = -17.22 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:18 2006