| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 22,064,656 – 22,064,769 |
| Length | 113 |
| Max. P | 0.871765 |
| Location | 22,064,656 – 22,064,769 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.72 |
| Mean single sequence MFE | -29.32 |
| Consensus MFE | -24.00 |
| Energy contribution | -23.44 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 22064656 113 - 27905053 AGGUGCAUGG---AAGAGUGCAGUCAACUG-UUGGCAAUAAGCCGAAAAUGUCGAUGGCAAAAA--GA-GUUCAUGCUACUGGCGACUAAACUGCCACAAAUCAAAUAUUAUUGCCCAAG .(((((((((---(....(((.(((.((..-(((((.....)))))....)).))).)))....--..-.)))))))...(((((.......)))))................))).... ( -29.60) >DroSec_CAF1 56660 113 - 1 AGGUGCAUGG---AAGUGUGCAGUCAACUG-UUGGCAAUAUGCUGAAAAUGUCGACGGCAAAAA--GA-GUUCAAGCUACUGGCGACUAAAGUGCCACAAAUCAAAUAUUAUUGCCCAAG ..(..(((..---..)))..).(((.((..-(..((.....))..)....)).)))(((((..(--((-((....))).))(((.((....)))))...............))))).... ( -26.70) >DroSim_CAF1 49640 113 - 1 AGGUGCAUGG---AAGUGUGCAGUCAACUG-UUGGCAAUAAGCCGAAAAUGUCGACGGCAAAAA--GA-GUUCAAGCUACUGGCGACUAAAGUGCCACAAAUCAAAUAUUAUUGCCCAAG ..(..(((..---..)))..).(((.((..-(((((.....)))))....)).)))(((((..(--((-((....))).))(((.((....)))))...............))))).... ( -28.90) >DroEre_CAF1 51217 119 - 1 AGGUGCAUGAACCAAAAGUGCAGUCAACUGCUUGGCAAUAAGCCGAAAAUGUCGACUGUAAA-UAAGCGUUUAAAGCUACUGGCGACCAAGCUGCCACAAAUCAAAUAUUAUUGCCCAAC .((.(((((((((.....(((((((.((...(((((.....)))))....)).)))))))..-...).))))).......(((((.......)))))...............)))))... ( -30.20) >DroYak_CAF1 59041 117 - 1 AGGUGCAUGG---AAAAGUGCAGUCAACUGUUUGGCAAUAAGCCGAAAAUGUCGACGGUAAAAAAAGCAGUUAAAGCCAGUGGCGACUAAACUGCCACAAAUCAAAUAUUAUUGCCCAAC ...(((((..---....)))))(((.((..((((((.....))))))...)).)))(((((.....((.......))..((((((.......)))))).............))))).... ( -31.20) >consensus AGGUGCAUGG___AAGAGUGCAGUCAACUG_UUGGCAAUAAGCCGAAAAUGUCGACGGCAAAAA__GA_GUUCAAGCUACUGGCGACUAAACUGCCACAAAUCAAAUAUUAUUGCCCAAG .((.(((...........(((.(((.((...(((((.....)))))....)).))).)))....................(((((.......)))))...............)))))... (-24.00 = -23.44 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:15 2006