Locus 8231

Sequence ID 3R_DroMel_CAF1
Location 22,064,468 – 22,064,576
Length 108
Max. P 0.890583
window13267

overview

Window 7

Location 22,064,468 – 22,064,576
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.79
Mean single sequence MFE -34.44
Consensus MFE -30.58
Energy contribution -30.98
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.89
SVM decision value 0.96
SVM RNA-class probability 0.890583
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22064468 108 - 27905053
CAAUUCAGGCGAGCGUGUUGCUAAAGAUAUAGCCAUGCGGAAAUGAAUUUAUUUGCGAACAUGGGGGUGGCA------------CAGCUGUGUGGCUAAAUCUAGCAUGGGAACCCGUGU
.......(((((.....)))))..((((.(((((((((((...((...((((((.(......).))))))..------------)).))))))))))).)))).((((((....)))))) ( -33.30)
>DroSec_CAF1 56472 108 - 1
CAAUUCAGGCGAGCGUGUUGCUAAAGAUAUAGCCAUGCGGAAAUGAAUUUAUUUGCGAACAUGGGGGUGCCA------------CAGCUGUGUGGCUAAAUCUAGCAUGGGAAGCCGUGU
.......(((((.....)))))..((((.((((((((((((((((....)))))(((..(....)..)))..------------...))))))))))).)))).((((((....)))))) ( -33.20)
>DroSim_CAF1 49452 108 - 1
CAAUUCAGGCGAGCGUGUUGCUAAAGAUAUAGCCAUGCGGAAAUGAAUUUAUUUGCGAACAUGGGGGUGCCA------------CAGCUGUGUGGCUAAAUCUAGCAUGGGAAGCCGUGU
.......(((((.....)))))..((((.((((((((((((((((....)))))(((..(....)..)))..------------...))))))))))).)))).((((((....)))))) ( -33.20)
>DroEre_CAF1 51030 108 - 1
CAAUUCAGGCGAGCGUGUUACUAAAGAUAUAGCCAUGCGGAAAUGAAUUUAUUUGCGAGCAUGGGGGUGCCA------------CAGCUGUGUGGCUAAAUCUAGCAUGGGAACCCGUGU
.....((.(....).)).......((((.((((((((((.(((((....))))).).(((.((((....)).------------)))))))))))))).)))).((((((....)))))) ( -32.40)
>DroYak_CAF1 58841 120 - 1
CCAUUCAGGCGAGCGUGUUGCUAAAGAUAUAGCCAUGCGGAAAUGAAUUUAUUUGCGAACAUGGGGGUGCCACAUCCACAGGCACAGCUGUGUGGCUAAAUCUAGCAUGGGAACCCGUGU
.......(((((.....)))))..((((.(((((...((.(((((....))))).)).((((((..(((((.........)))))..))))))))))).)))).((((((....)))))) ( -40.10)
>consensus
CAAUUCAGGCGAGCGUGUUGCUAAAGAUAUAGCCAUGCGGAAAUGAAUUUAUUUGCGAACAUGGGGGUGCCA____________CAGCUGUGUGGCUAAAUCUAGCAUGGGAACCCGUGU
.......(((((.....)))))..((((.((((((((((((((((....)))))(((..(....)..))).................))))))))))).)))).((((((....)))))) (-30.58 = -30.98 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:14 2006