Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,835,328 – 2,835,423 |
Length | 95 |
Max. P | 0.964870 |
Location | 2,835,328 – 2,835,423 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 96.84 |
Mean single sequence MFE | -29.06 |
Consensus MFE | -27.36 |
Energy contribution | -27.44 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.55 |
Structure conservation index | 0.94 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2835328 95 + 27905053 UGCGUUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUCGUCGAUGGUGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA ...(((...((((((((.(........).))))...(((((((((((..((((....)))).))))))))))).....))))..)))........ ( -30.60) >DroSec_CAF1 110499 95 + 1 UGCGCUUUGUGUCUCCGCUACAGUUAAAACGGAACCCGUCGUCGUCGAUGGUGACUCCACUUUGGCGACGACGAAAACGACAACGACUUAAUUAA ......(((((((((((............))))...((((((((((((.((((....)))))))))))))))).....))).))))......... ( -31.40) >DroSim_CAF1 115187 95 + 1 UGCGCUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUAGUCGAUGGUGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA ......(((((((((((.(........).))))...((((((.((((..((((....)))).)))).)))))).....))).))))......... ( -23.60) >DroEre_CAF1 113860 95 + 1 UGCGUUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUCGUCGAUGGCGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA ...(((...((((((((.(........).))))...(((((((((((..(.........)..))))))))))).....))))..)))........ ( -29.10) >DroYak_CAF1 114053 95 + 1 UGCGUUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUCGUCGAUGGUGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA ...(((...((((((((.(........).))))...(((((((((((..((((....)))).))))))))))).....))))..)))........ ( -30.60) >consensus UGCGUUUUGUGUCUCCGCUGCAGUUAAAACGGAACCCGUCGUCGUCGAUGGUGACUCUACUCCGGCGACGACGAAAACGACAACGACUUAAUUAA ......(((((((((((.(........).))))...(((((((((((..((((....)))).))))))))))).....))).))))......... (-27.36 = -27.44 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:00 2006