Locus 8221

Sequence ID 3R_DroMel_CAF1
Location 22,055,442 – 22,055,534
Length 92
Max. P 0.799965
window13233

overview

Window 3

Location 22,055,442 – 22,055,534
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 93.80
Mean single sequence MFE -19.58
Consensus MFE -17.90
Energy contribution -18.30
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.91
SVM decision value 0.61
SVM RNA-class probability 0.799965
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 22055442 92 + 27905053
CUAAUAAAAAUGCAAUUUUUAUGGUUAAGAAAAUAGUGCGCGAACGCCGUUGUGUUGCACAUUGGAAAUUGUGCAGAAGCCAGAAGAAAAUG
...............(((((.(((((...........((((((......))))))((((((.(....).))))))..))))).))))).... ( -19.30)
>DroSec_CAF1 47525 83 + 1
---------AUGCAAUUUUUAUGGUUAAGAAAAUAGAGCGCGGACGCCGUUGUGUUGCACAUUGGAAAUUUUGCAGAAGCCAGAAGAAAAUG
---------......(((((.(((((.....((((.(((((....).)))).))))(((...(....)...)))...))))).))))).... ( -14.50)
>DroSim_CAF1 40195 92 + 1
CUAAUAAAAAUGCAAUUUUUAUGGUUAAGAAAAUAGAGCGCGGACGCCGUUGUGUUGCACAUUGGAAAUUGUGCAGAAGCCAGAAGAAAAUG
...............(((((.(((((.....((((.(((((....).)))).))))(((((.(....).)))))...))))).))))).... ( -20.30)
>DroEre_CAF1 41930 92 + 1
CCAAUAAAAAUGCAAUUUUUAUGGUUAAGAAAAUAGAGCGCGGCCGCCGUUGUGUUGCACAUUGGAAAUUGUGCAGAAGCCAGAAGAAAAUG
...............(((((.(((((..........((((((((....))))))))(((((.(....).)))))...))))).))))).... ( -21.90)
>DroYak_CAF1 49694 92 + 1
CUAAUAAAAAUGCAAUUUUUAUGGUUAAGAAAAUAGAGCGCGGCCGCCGUUGUGUUGCACAUUGGAAAUUGUGCAGAAGCCAGAAGAAAAUG
...............(((((.(((((..........((((((((....))))))))(((((.(....).)))))...))))).))))).... ( -21.90)
>consensus
CUAAUAAAAAUGCAAUUUUUAUGGUUAAGAAAAUAGAGCGCGGACGCCGUUGUGUUGCACAUUGGAAAUUGUGCAGAAGCCAGAAGAAAAUG
...............(((((.(((((.....((((.(((((....).)))).))))(((((........)))))...))))).))))).... (-17.90 = -18.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:42 2006