Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,830,461 – 2,830,557 |
Length | 96 |
Max. P | 0.573032 |
Location | 2,830,461 – 2,830,557 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 76.30 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -12.15 |
Energy contribution | -12.04 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.22 |
Mean z-score | -1.38 |
Structure conservation index | 0.60 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2830461 96 + 27905053 GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACGAACAAGCACACACUCACAGAUACACACGCACUCUCC-GGAGCACCCACACUUUACCCC- ((((((.....((..(((....)))....)).)))))).............(((..(((...........)))..-.))).................- ( -17.20) >DroVir_CAF1 164214 87 + 1 UUGGUGAAAUACGAUGUGGCAACACCCUACAGCGCCACUAGCAUGCACACCCACACAC-----CA--CACACUCGCAGA-GACUCUCCCUCUG-CC-- .(((((.........(((....)))......((.......)).............)))-----))--.......(((((-(.......)))))-).-- ( -21.70) >DroSec_CAF1 105605 95 + 1 GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACUAACAUGCACACACUCACAGAUACGCAUGCACACUCC-GGAGCACCCACACUUUU-CCC- ((((((.....((..(((....)))....)).))))))...(((((................)))))........-((.....))........-...- ( -20.29) >DroYak_CAF1 109001 91 + 1 GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACUAACAUGCACACACUCACAGAUACGCACGCACUCUCC-GUAGCACCC----UCUU-CCC- ..((((...((((..(((....)))...((((((...........................))).)))......)-))).)))).----....-...- ( -20.83) >DroMoj_CAF1 171069 92 + 1 GUGGUGAAAUACGAUGUGGCAACACCCUACAGUGCUACUAACAUGCACACCCACACCCACACACA--UACACUCGCGGA-GACUCUCCCUCUG-CC-- ((((((.........(((....)))......((((.........)))).....)).)))).....--.......(((((-(.......)))))-).-- ( -24.50) >DroAna_CAF1 96903 86 + 1 GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACUAACAUGCACCCACACAACCAAAC-----------CC-GGCUCACCCACACUUUCUCCCU (((((((....((..(((....)))...(.((.((.........)).)))............-----------.)-)..))).))))........... ( -16.10) >consensus GUGGUGAAAUACGAUGUGGCAACACCCAGCGGCGCCACUAACAUGCACACACACACACAUAC_CA__CACACUCC_GGAGCACCCACACUCUG_CCC_ ((((((.........(((....))).......))))))............................................................ (-12.15 = -12.04 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:59 2006